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Radioimmunoprecipitation assay (ripa)

Manufactured by Beyotime
Sourced in China, United States, Germany, Switzerland

RIPA is a lysis buffer used for the extraction and preparation of protein samples from cells and tissues. It is a commonly used reagent in various laboratory techniques, such as Western blotting and immunoprecipitation, to solubilize proteins and maintain their native structure and function.

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882 protocols using radioimmunoprecipitation assay (ripa)

1

Hippocampus and Cortex Protein Analysis

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Proteins in the hippocampus and cortex (five mice per group) were lysed using radioimmunoprecipitation assay (RIPA, Beyotime) lysis buffer and phenylmethanesulfonyl fluoride (PMSF, Beyotime) (RIPA:PMSF = 100:1) supplemented with protease inhibitors (Roche). After determination of protein concentration using BCA Protein Assay Kit (Beyotime), equal amounts of protein (50 μg) was separated by SDS-PAGE and electrotransferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MS, USA). Then the PVDF membranes were blocked using 5% nonfat milk for 2 h, incubated with primary antibodies (4 °C) overnight, and incubated with HRP-conjugated secondary anti-rabbit or anti-mouse antibodies (1:5000, Multi Sciences, China) for 1 h at 37 °C. Immunoreactive bands were observed by enhanced chemiluminescent substrate (ECL, Pierce) exposure to X-ray films. At last, the bands were quantified using Image J, and the relative intensity of each band was normalized to the band of β-actin.
Target proteins were detected using the following primary antibodies: Bax (Abcam, 1:1000), Bcl-2 (Abcam, 1:500), LC3 (Sigma-Aldrich, 1:1000), P62 (Cell Signaling Technology, 1:1000), DIC (Millipore, 1:1000), KIF3B (Cell Signaling Technology, 1:1000), and β-actin (Beijing 4A Biotech Co., Ltd, 1:5000).
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2

Protein Extraction from Egg Samples

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Egg samples of 0.2–0.5 g per replicate (n = 3 or 4) were homogenized in radioimmunoprecipitation assay buffer (RIPA) (Beyotime Biotechnology, China) with 1 mM phenylmethanesulfonyl fluoride (PMSF) (Beyotime Biotechnology, China) for 2 min using a standard microhomogenizing package (PRO-PK-02200S, PRO Scientific, USA). The homogenate was centrifuged at 12000 g for 10 min at 4°C, and the supernatant was collected. The supernatant was diluted tenfold using RIPA buffer, and the protein content was determined with an Enhanced BCA Protein Assay Kit (Beyotime Biotechnology, China).
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3

Corneal Protein Expression Analysis

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Cornea tissues were collected and homogenized in RIPA (Beyotime, Shanghai, China) buffer with PMSF (Beyotime, Shanghai, China) (RIPA: PMSF = 100:1), and lysed on ice for 30 minutes. The supernatant was removed after centrifugation at 4°C (15 minutes as 12,000 rpm) and protein quantification was performed by BCA protein assay (ElabScience, Wuhan, China). Then transferred to an 0.22-µm polyvinylidene difluoride membrane (BioSharp, Tallinn, Harjumaa, Estonia) after separation by 12.5% sodium dodecyl-sulfate polyacrylamide gel electrophoresis. The membranes were blocked with 1% skim milk powder for 1 hour, the primary antibody against β-actin (1:5000 BioWorld, Nanjing, China), tumor necrosis factor (TNF)-α (1:1000; Abcam, Branford, CT) and IL-1β (1:1000 BioWorld) were applied sequentially with overnight incubations at 4°C, and the membranes were washed three times in Tris-buffered saline with Tween. The secondary antibody was incubated for 1 hour at room temperature, washed three times with -buffered saline with Tween, and blotted with chemiluminescence (ECL; Thermo Fisher Scientific, Waltham MA) for chemiluminescence observation.
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4

Protein Expression Analysis in Hepatic Tissue

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Hepatic tissue samples were removed from BALB/c mice and then were homogenized manually with glass homogenizers. The tissues were processed in Radioimmunoprecipitation Assay (Beyotime Biotechnology Company, Jiangsu, China) and centrifuged at 12000 g for 15 min at 4°C. Supernatant protein concentrations were assessed using BCA Protein Assay Kit (Beyotime Biotechnology Company, Jiangsu, China). Cytoplasmic and nuclear fractionations were performed with NE-PER Nuclear and Cytoplasmic Extraction Reagents (Pierce Biotechnology) according to the producer's instruction. Proteins were separated in 10% polyacrylamide sodium dodecyl sulfate gels and then were transferred to polyvinylidene fluoride membrane. The membranes were blocked using 5% nonfat milk for 2 hours and then were probed with antibodies against ERK1/2 (1 : 500), p38 (1 : 500), JNK (1 : 500), phospho-Erk1/2 (1 : 500), phospho-p38 (1 : 500), phospho-JNK (1 : 500), NF-κb (1 : 500), IκB-α (1 : 500), β-actin (1 : 1000), and lamin B1 (1 : 500), for an overnight incubation. After that, the membranes were incubated with secondary antibodies conjugated with horseradish peroxidase (HRP) for 1 hour. After washing, the proteins were detected with BeyoECL Plus (Beyotime Biotechnology Company, Jiangsu, China) and images were captured with the UVP imaging system.
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5

Protein Extraction and Western Blot Analysis

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Cells were harvested in phosphate-buffered saline (PBS) and centrifuged for 1 minute at 13,000 rpm. The pellet was resuspended in 100 μL of lysis buffer (radio-immunoprecipitation assay [Beyotime, Shanghai, People’s Republic of China], Cocktail, and phenylmethanesulfonyl fluoride [Hoffman-La Roche Ltd., Basel, Switzerland]) and incubated for 30 minutes on ice. The lysate was centrifuged for 10 minutes at 12,000 rpm at 4°C. The protein amount was determined using the bovine serum albumin (BSA) kit (Beyotime). For immunoblotting, the following antibodies were used: anti-MAP2K7 (55030-1-Ap; Proteintech, Rosemont, IL, USA), anti-E-cadherin (ab1416; Abcam, Cambridge, UK), anti-N-cadherin (4061; cell signaling technology), and anti-GAPDH (AP0063; Bioworld Technology, St Louis Park, MN, USA). Bound antibodies were detected by using peroxidase-labeled secondary antibodies (Proteintech) and immunoblotting and enhanced chemiluminescence detection reagents from Thermo Fisher Scientific.
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6

Western Blot Analysis of Cell Signaling

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Cells were lysed using radioimmunoprecipitation assay (Beyotime Institute of Biotechnology, Haimen, China) on ice for 30 min. The proteins were quantified with Bicinchoninic Acid Protein Assay kit (Thermo Fisher Scientific, Inc.). Proteins (40 µg) were separated by 6–12% SDS-PAGE and then transferred onto nitrocellulose membranes (Pall Life Sciences, Port Washington, NY, USA) and blocked with 5% non-fat milk in TBS-containing 0.05% Tween 20 for 2 h at room temperature. The membranes were incubated with anti-cyclin D1 (1:1,000 dilution), anti-p21 (1:1,000 dilution), anti-p27 (1:1,000 dilution), anti-Bax (1:1,000 dilution), anti-Bcl-2 (1:1,000 dilution), anti-p-AKT (1:1,000 dilution), anti-AKT (1:1,000 dilution), anti-cleaved PARP and anti-GAPDH (1:3,000 dilution) antibodies at 4°C overnight. Membranes were then incubated with horseradish peroxidase (HRP)-conjugated anti-mouse immunoglobulin (Ig)G (cat. no. 7076; 1:25,000) and HRP-conjugated anti-rabbit IgG (cat. no. 7074; 1:20,000; both Cell Signaling Technology, Inc.) secondary antibodies for 2 h at 25°C. Visualization was performed using a SuperSignal West Pico chemiluminescent substrate (Pierce; Thermo Fisher Scientific, Inc.).
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7

Western Blot Analysis of VEGF-A in Human HCC Tissue

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We prepared human HCC tissue samples and cell lysates in a buffer mixture containing 1 mL radioimmunoprecipitation assay (Beyotime, Shanghai, China). Sodium dodecyl sulfate-polyacrylamide gel was used to separate the total protein, which was shifted to polyvinylidene difluoride membranes (EMD Millipore, Billerica, MA, USA) at 320 mA at 4 °C for 2 h. Non-fat milk (10%) was used to block the membranes, which were next incubated with the primary antibodies (anti-VEGF-A: 1:1,000 dilutions, Abcam, Eugene, OR, USA) overnight. Horseradish peroxidase-conjugated secondary antibody [Peroxidase-AffiniPure Goat Anti-Rabbit IgG (H + L), 1:200 dilution, ZSGB-Bio, Nanjing, Jiangsu, China] was used to probe the membranes at room temperature for 2 h. The protein bands were visualized with electrochemiluminescence (Millipore, Billerica, MA, USA) following the manufacturer’s instructions and quantified using ImageJ 1.8.0.
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8

Protein Expression Analysis by RIPA

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Radioimmunoprecipitation assay (Beyotime, Shanghai, China) was used for lysing cells or tissues. The mixture was centrifuged at 4 °C, 12,000 × g for 5 min. Protein samples were quantified using the BCA assay. Ten micrograms protein sample was loaded in 15% SDS-PAGE and transferred to polyvinylidene fluoride membranes. After nonspecific antigen blockage, the membrane was immunoprecipitated with primary antibodies (ProteinTech, Wuhan, China) at 4 °C overnight and secondary antibodies for 2 h. Band exposure was achieved by electrochemiluminescence (Pierce, Rockford, IL, USA) and analyzed by Image-Pro Plus (Media Cybernetics, Silver Springs, MD, USA).
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9

Western Blot Analysis of B7-H1 Expression

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Cells were collected and lysed using Radio Immunoprecipitation Assay (Beyotime Biotechnology Company, China) with proteinase inhibitor according to manufacturer's protocol. Briefly, the lysate was centrifuged at 12000 g for 15min at 4°C. Then supernatant was collected and protein concentration was measured using BCA Protein Assay Kit (Beyotime Biotechnology Company, China). 20 ug protein of each sample was separated in 10% polyacrylamide sodium dodecyl sulfate gels. Then protein was transferred to to polyvinylidene fluoride membrane and blocked with 5% fat-free milk for 3 hours with Tris-buffered saline Tween-20 (TBST) (Beyotime, Beijing, China) at room temperature. The membranes were incubated with antibodies against B7-H1 (1:1000, Cell Signaling Technology, USA), GAPDH (1:3000, 6C5, Abcam, USA) overnight at 4°C and washed 3 times (10 minutes per time) after incubation. After that, The membranes were processed in secondary antibodies conjugated with horseradish peroxidase (HRP) for 1–2 hours at dilution of 1:4000. After washing as previously, the protein was detected using an ECL Kit (Beyotime Biotechnology Company, China) and images were captured by the UVP imaging system. B7-H1 expression was normalized to endogenous reference GAPDH.
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10

Western Blot Analysis of Decorin and MAPK Signaling

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Proteins were extracted from the harvested cells using radioimmunoprecipitation assay (Beyotime Institute of Biotechnology, Haimen, China), and protein concentration was determined using Pierce® BCA Protein Assay kit (Pierce; Thermo Fisher Scientific, Inc.). Proteins were separated using SDS-PAGE (10% gel), and transferred onto polyvinylidene difluoride membranes. Subsequently, the membranes were blocked at room temperature for 1 h using 5% non-fat milk in tris-buffered saline and incubated with primary antibodies: Anti-decorin (cat. no. ab175404), anti-MEK (cat. no. ab178876), anti-ERK (cat. no. ab54230), anti-p-ERK (cat. no. ab222493) and anti-p21 (cat. no. ab109520; all 1:1,000; Abcam, Cambridge, MA, USA) at 4°C overnight. The membranes were washed and incubated with secondary antibodies (horseradish peroxidase-conjugated goat anti-rabbit; cat. no. ab6721; 1:5,000; Abcam). Bands were visualized by incubation with Novex® ECL Chemiluminescent Substrate Reagent kit (Thermo Fisher Scientific, Inc.), and the signals were detected using ChemiDoc XRS+ imaging system (Bio-Rad Laboratories, Inc., Hercules, CA, USA).
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