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25 protocols using anti cd28 clone 37

1

Selenium-Mediated Modulation of Th17 Cell Differentiation

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WT C57BL/6 mice or CD4Cre Tcf7fl/fl mice CD4+ naïve T cells were isolated using magnetic beads (Miltenyi Biotec, Bergisch Gladbach, Germany) and further sorted in a flow cytometer (Aria III, BD). CD4+CD25CD44CD62L+ naïve T cells with a purity of > 95% were used for in vitro culture experiments. Naïve CD4+ T cells were cultured in the anti‐CD3 (clone: 17A2, Biolegend) and anti‐CD28 (clone: 37.51, Biolegend)‐coated 96‐well plates and cultured under a Th17 cell polarisation condition: TGF‐β (1 ng mL−1, PeproTech, Cranbury, NJ, USA), IL‐6 (20 ng mL−1, PeproTech), anti‐IFN‐γ (10 μg mL‐−1, PeproTech) and anti‐IL‐4 (10 μg mL−1, PeproTech) for 72 h. Se‐Met (0, 1.25 and 5 μM) with or without NAC (2 μM, Sigma‐Aldrich) was added to the culture medium. For the CFSE‐labelled proliferation assay, naïve CD4+ T cells were pre‐stained with CFSE (1 μg mL−1) at 37°C for 10 min and then cultured in the anti‐CD3/CD28‐coated plates for 72 h.
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2

Transcriptome Analysis of LCMV-Specific T Cells

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P14 cells were sorted (BD FACS Aria, BD Biosciences) from animals with either acute or chronic LCMV infection. After 4 h of in vitro restimulation in the presence of anti-CD3 (clone 145-2C11, Biolegend) and anti-CD28 (clone 37.51, Biolegend) antibodies, RNA was extracted using TRIzol (Thermofisher Scientific) according to the manufacturer’s protocol and processed for sequencing at the Functional Genomics Center Zürich (FGCZ). The extracted RNA was selected for messenger RNA (mRNA) transcripts using polyA-tail capture. The enriched mRNA was reverse transcribed and sequenced on the Illumnia HiSeq 4000 platform. Resulting transcript counts were analyzed and differential gene expression was analyzed using the DEseq2 package45 (link) in R46 .
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3

Splenocyte Isolation and Activation

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Splenocytes were isolated by mechanical disruption and made into single cell suspensions in RPMI 1640 medium supplemented with 10% BCS and penicillin/streptomycin. Red blood cells were lysed using Zap-oglobin prior to counting splenocytes on a Beckman Coulter Counter following manufacturer’s instructions with a size threshold of 4.0 μm. Splenocytes were then cultured at 1 × 106 cells/well in 96 well plates (for proliferation assay) or 2.5 × 106 cell/well in 48 well plates (for ELISA and flow cytometry analyses). Cells were treated with 15 μg/ml LPS (S. typhosa, Sigma Aldrich, St. Louis, MO), 15 μg/ml PWM (Sigma Aldrich), or 1 μg/ml anti-CD3 (clone 145-2C11, Biolegend, San Diego, CA) plus 10 μg/ml anti-CD28 (clone 37.51, Biolegend). For anti-CD3/CD28 treatment, culture plates were coated overnight with 1 μg/ml anti-CD3 at 4 °C, washed twice with 1640 RPMI, and then seeded with cells and 10 μg/ml anti-CD28. Cells were culture at 37 °C with 5% CO2 for up to 72 hours.
Post-activation, cells were harvested by centrifugation at 500 × g for 5 minutes. Supernatants were collected for IgM ELISA, and cells were washed in Hank’s Balanced Salt Solution and stained for flow cytometry.
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4

T Cell Activation Assay

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OT-I Rgs1+/+ T cells were FACS sorted, and 1x105 cells/well were distributed in a 96-U-bottom-well plate in 200μl cell culture media (RMPI 1640 + 2mM L-Ala/L-Glu, 1mM Sodium Pyruvate, 10mM HEPES, 1x MEM non-essential amino acids, 0.5mM 2-β-Mercaptothion, 10% FCS, 40 U/ml Penicillin, 40μg/ml Streptomycin (all Sigma-Aldrich, St. Louis, USA)) and stimulated with distinct cytokines and TCR-crosslinking mAbs. For TCR stimulation, plates were previously coated with anti-CD3ε and anti-CD28 mAb´s (anti-CD3ε: clone 145-2C11, anti-CD28: clone 37.51, both Biolegend, San Diego, USA) for 12h. The cells were treated with recombinant murine IL-2 (50 ng/ml, R&D Systems, Minneapolis, USA), IL-15 (50 ng/ml, Peprotech, London, United Kingdom), IL-33 (100 ng/ml, Peprotech, London, United Kingdom) and/or recombinant human TGFβ1 (50 ng/ml Peprotech, London, United Kingdom). The cells were incubated for 72h, at 37°C in 5% CO2.
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5

Isolation and Activation of Mouse CD8+ T Cells

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Mouse CD8+ T cells were prepared as previously described.35 (link) Spleens and lymph nodes from wild-type C57BL/6 or HRH1−/− mice were harvested and filtered through a 70 µm cell strainer to generate a single-cell suspension. CD8+T cells were isolated by using mouse CD8 naïve T-cell isolation kit (BioLegend) and then plated in DC/T cell medium supplemented with β-mercaptoethanol (50 µM), 20 ng/mL recombinant mouse IL-2 (PeproTech) and 10 ng/mL recombinant mouse IL-7 (PeproTech). For activated T cells, cells were cultured in 48-well plates coated with 5 µg/mL anti-CD3 (clone 145–2 C11, BioLegend) and 2.5 µg/mL anti-CD28 (clone 37.51, BioLegend) antibodies for 48 hours and then transferred to uncoated plates for at least 24 hours before use.
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6

Modulating T Cell Signaling Pathways

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For PP2 assay, day 6–10 blasting T cells were pre-incubated with PP2 (10 μM; 4-Amino-5-(4-chlorophenyl)-7-(t-butyl)pyrazolo[3,4-d]pyrimidine; Sigma-Aldrich) for 1 h at 37 °C and 5% CO2. Pre-treated cells were imaged at 37 °C and 5% CO2 in the presence of 10 μM PP2.
For CD4 and CD28 blockade, an anti-CD4 (clone Gk1.5, BioLegend) or anti-CD28 (clone 37.51, BioLegend) Fab was prepared and purified with Micro Fab Preparation Kit (Thermo Fisher Scientific). Day 6–10 T cells were pre-incubated for 1 h at 37 °C and 5% CO2 with anti-CD4 Fab (2 μg/mL) or anti-CD28 Fab (4 μg/mL) then imaged in the presence of 2 μg/mL Fab.
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7

Murine CD4+ T Cell Activation

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All primary murine CD4+ T cells came from homozygous OT-II TCR transgenic mice (Taconic). The following antibodies were used in this study: biotinylated anti–human-CD25 (clone BC96), biotinylated anti-CD3ε (clone 145-2C11), biotinylated anti-CD43 (clone 1B11), and anti-CD28 (clone 37.51) from BioLegend, and anti-CD3ε (clone 145-2C11) from Bio X Cell. Biotinylated I-Ab presenting OVA(323–339) was obtained from the National Institutes of Health Tetramer Facility for pMHC studies. Ovalbumin peptide 323–339 was obtained from AnaSpec, and recombinant human interleukin-2 was obtained from Prometheus. Latrunculin A was obtained from Cayman Chemical, ML-7 from Santa Cruz Biotechnology, Inc., and 2-APB from Abcam.
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8

Stimulation of Alveolar Macrophages with LPS and Luteolin

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For the experiments described in the manuscript, soluble stimuli were used at the following concentrations: lipopolysaccharide (LPS, InvivoGen) 500 ng/ml, CpG (InvivoGen) 100 nM, IL-1ß (ThermoFisher) 200 ng/ml, anti-CD40 (clone 1C10, Biolegend) 1 µg/ml, PMA (Sigma) 10−7M, ionomycin (Sigma) 1 μg/ml. For plate coating, anti-CD3ε (clone 145-2C11, Biolegend) and anti-CD28 (clone 37.51, Biolegend) were used at a concentration of 2 µg/ml, at and anti-IgM F(ab’)2 (Jackson Immunoresearch Laboratories) at 10 µg/ml. For the stimulation of in vitro cultured alveolar macrophages, cells were collected using 4 mM EDTA in PBS and counted. 1 × 105 cells per well were plated in an untreated 96-well plate overnight and stimulated on the consecutive day with 400 ng/mL LPS and/or 100 µM luteolin (Sigma-Aldrich). At the end of the stimulation supernatant was carefully removed and frozen for ELISA analysis. Cells were detached using 4 mM EDTA in PBS, washed once and stained with 1:4000 SytoxRed in PBS 2% FCS before flow cytometric analysis.
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9

Isolation and in vitro Stimulation of Naive CD8+ T Cells

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Naive OT-1 or P14 cells, respectively, from spleen were purified using naive CD8a+ T Cell Isolation Kit (Miltenyi Biotec) and subsequently separated by AutoMACS (Miltenyi Biotec). Purity of the cells (95%) was confirmed by flow cytometry. For in vitro stimulation, 2×105 naive CD8+ T cells were resuspended in D-MEM supplemented with 10% FCS (fetal calf serum), 2 mM GlutaMAX (GIBCO), 10 mM HEPES (GIBCO), 100 U/mL Penicillin/Streptomycin (GIBCO), and 50 μM 2-Mercaptoethanol and stimulated with anti-CD3 (clone 145.2C11, Biolegend), anti-CD28 (clone 37.51, Biolegend) (1 mg/ml) and recombinant murine IL-12 (Peprotech) in 96-well plates pre-coated with 100 μg/mL goat anti-hamster IgG (H+L) secondary antibody (Jackson Immunoresearch).
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10

Isolation and Activation of Naïve CD8+ T Cells

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CD8+CD44 T cells were purified from spleen and peripheral lymph nodes using the MojoSort™ Mouse CD8 Naïve T-Cell Isolation Kit (BioLegend, #480044) followed by CD25-depletion using the mouse CD25 MicroBead Kit (Miltenyl Biotec, #130-091-072), all according to manufacturers’ protocols. Naïve CD8+ T cells (1 × 106/mL) were activated with plate-bound anti-CD3 (clone 145-2C11, 0.25 μg/ml, BioLegend) and anti-CD28 (clone 37.51, 0.5 μg/ml, BioLegend) in T-cell medium (high glucose DMEM, 10% FBS, penicillin/streptomycin, non-essential amino acids, HEPES, L-glutamate and sodium pyruvate) at 37°C in 10% CO2 for 2 days. Cells were then removed from CD3/CD28 activation and re-cultured (5 × 105/ml) in differentiation medium (T-cell medium supplemented with 10 IU/ml rhIL-2 from NCI) at 37°C in 10% CO2. Cells were then sub-cultured every day in differentiation medium at 5 × 105/ml each sub-culture. On day 5, cells were harvested and used for Western blots, ChIP-qPCR, qPCR or adoptive T-cell transfer.
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