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20 protocols using rhifn γ

1

Generation and Activation of Human Macrophages

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Human monocytes were isolated from buffy coats or fresh blood from healthy donors by serial density‐gradient centrifugation as previously described,23 or using the CD14 MicroBead Kit (Miltenyi Biotec, Bergisch Gladbach, DE) accordingly to the manufacturer's instructions. Human blood cell isolation was approved by the institutional Ethical Committee of the Humanitas Clinical and Research Center (Authorization n° 2502, 09/04/2020 and Approval for the use of buffy coats issued on 28/01/2016). Monocytes were treated for 7 days with 25 ng/ml rhM‐CSF (Peprotech, London, GB) to obtain Mϕs, in RPMI 1640 (Lonza, Basel, CH) with 10% FBS (Lonza, Basel, CH) and 1% l‐glutamine (Lonza, Basel, CH). Mϕs were activated in vitro by 18 h incubation with 100 ng/ml 055:B5 LPS (Sigma–Aldrich, St Louis, MO, USA), 20 ng/ml rhIFN‐γ (Peprotech, London, GB), a combination of 100 ng/ml LPS and 20 ng/ml rhIFN‐γ, 20 ng/ml rhTNF (Peprotech, London, GB), 20 ng/ml rhIL‐10 (Peprotech, London, GB), 20 ng/ml rh TGF‐β (rhTGF‐β) (Peprotech, London, GB), 10−6 M Dexamethasone (Dex) (MP‐Biomedicals, Illkirch, FR), 20 ng/ml rhIL‐4, or 10−6 M Dex in combination with 20 ng/ml IL‐4.
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2

Generation of Large Multinucleated Cells

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Peripheral blood from healthy volunteers was collected after informed consent and ethical approval. Peripheral blood mononuclear cells (PBMCs) are isolated through Ficoll-Paque™ (Stemcell, USA) density gradient centrifugation. Wash the PBMCs with PBS. PBMCs were plated at a density of 106 cells/mL in RPMI-1640 medium containing 2% fetal bovine serum (FBS), 100 U/mL penicillin, and 100 U/mL streptomycin. After an hour, the cells were washed for three times with PBS and the adherent cells were cultured in the presence of 20 ng/mL rhGM-CSF (Peprotech, USA) and 10 ng/mL rh IFN-γ (Peprotech, USA) in RPMI-1640 medium containing 20% FBS for 7 days.11 (link) The cells were supplemented with fresh medium every 2 days. At the end of the culture period, the number of nuclei per cell was determined by rapid Wright-Giemsa staining (Jiancheng Biotech, China) or immunofluorescence staining. LGCs were defined as cells with more than three nuclei per cell.
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3

Peripheral Blood Immune Cell Profiling

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Fresh peripheral blood samples were collected from healthy volunteers. The human lung cancer cell line A549 was derived from the passaged cell line preserved in the immunology laboratory of Zunyi Medical University. Tim-3 blocking antibody (AB_1877089) and PD-1 blocking antibody (AB_2820104) were purchased from Biolegend Inc., USA. The cell factors rhIL-4, rhGM-CSF, rhIFN-γ, rhTNF-α, and CD3McAb were purchased from Peprotech Inc., USA. Flow cytometry antibodies CD3-PE-Cy5, CD56-RD1, CD4-FITC, CD8-PC-Cy7, Tim-3-APC, and PD-1-PE were purchased from BD Inc., USA. The 1640 medium was purchased from Thermo Scientific Inc., USA. The GTT-551 H3 medium was from TaKaRa Company, Dalian, China.
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4

In Vitro B Cell Differentiation Assays

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In vitro naive and memory B cell differentiation assays were performed as reported previously (8 (link), 13 (link)). In short, irradiated 3T3 fibroblasts expressing human CD40L were cocultured with purified naive mature (CD19+CD38–/dimCD27; primary response) or memory (CD19+CD38–/dimCD27+; recall response) B cells in the presence of rhIL-21 (50 ng/ml; Thermo Fisher Scientific). For naive B cell cultures, rhIFN-γ (50 ng/ml; Peprotech) was added with and without CpG-ODN (10 μg/ml; Invivogen) to induce class switching and ASC development, respectively (8 (link)). After 6 (recall response) or 11 (primary response) days of culturing, viable (live/dead) CD19+ cells were examined using flow cytometry. The supernatants were collected and stored at –80°C until further use.
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5

Isolation and Characterization of CIK Cells

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CIK cells were obtained from PBMCs of healthy donors isolated by means of Ficoll-Paque PLUS (GE Healthcare) density gradient centrifugation, according to standard protocols.10 (link) PBMCs were plated in RPMI 1640 (Euroclone) supplemented with 10% heat-inactivated FBS (Gibco), 1% Ultraglutamine, 1% Hepes buffer, 1% penicillin/streptomycin (all from Lonza), at 37°C and 5% CO2, and stimulated with rhIFN-γ (PeproTech) at 1000 U/ml at day 0. Twenty-four hours later, anti-CD3 mAb (OKT-3, Ortho Biotech Inc) at 50 ng/ml and rhIL-2 (Proleukin, Novartis) at 500 IU/ml were added to the culture medium; every 2–3 days medium was replenished and fresh rhIL-2 at 500 IU/ml was added. CIK cells phenotype was analyzed by multi-color flow cytometry, using the following antibodies: CD3-BV510 (clone UCHT1), IL-2-BV421 (clone 5344.111), CD25-APC (IL-2 Rα, clone M-A251), CD122-BV650 (IL-2Rβ, clone Mik-β3), CD132-BV786 (IL-2Rγ, clone AG184), from BD Bioscience; CD56-PE (clone HCD56), CD16a-FITC (clone 3G8), from BioLegend. Flow cytometry analysis was performed on either LSRII or Celesta, using DIVA software (BD Bioscience). Data analyzes were performed using FlowJo software (Treestar).
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6

MHC-I and MHC-II Induction in Tumor Cells

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Overall, 100,000 tumor cells were cultured in T2 medium containing the specified stimulation agents. For MHC-I upregulation, cells were treated with 10 ng/mL recombinant human Interferon Gamma (rhIFN)-γ (Peprotech) for 24 hours. For MHC-II induction, cells were incubated with 30 ng/mL rhIFN-γ for 3 days or transduced with human Class II Major Histocompatibility Complex Transactivator (hCIITA)+/- lentiviral vectors. The appropriate controls of unstimulated and untransduced cells were also included in the experiments. MHC-I and/or MHC-II expression was detected by flow cytometry using the antibodies specified on online supplemental table 2.
hCIITA was cloned into pHIV-Luc-ZsGreen (Addgene) backbone and DNA was isolated using EndoFree Plasmid Kit (Qiagen). hCIITA-expressing lentiviral particles were produced by co-transfecting HEK293T cells with the pHIV-CIITA-ZsGreen plasmid, the pMD2.G envelope plasmid and the psPAX2 packaging plasmid. Virus-containing supernatants were concentrated by ultracentrifugation and TCLs were transduced by spinoculation with hCIITA-expressing lentiviral particles.
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7

Cell Growth Modulation by IFN-γ

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Cell growth rates were determined using a Cell Counting Kit-8 (DOjinDO Laboratories, Japan) (CCK-8). Cells were seeded in a 96-well plate at a density of 5 × 103 cells and incubated at 37 °C in a humidified atmosphere containing 5 % CO2. After 24 h, cultured cells were treated with different dosages of recombinant human IFN-γ (rhIFN-γ) (Peprotech, Rocky Hill, NJ, USA). The CCK-8 assay was then performed according to the manufacturer’s instructions. Three independent experiments were performed, and data were expressed as the mean ± SD. For the focus formation assay, 1 × 103 cells were seeded in a 6-well plate and stimulated with or without 10 ng/ml(10000 IU/ml) rhIFN-γ for 2 weeks. Media were changed every three days. Surviving colonies were fixed and stained with 1 % crystal violet. Three independent experiments were performed.
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8

IFN-γ Stimulated THP-1 Cells

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THP-1 cells with a density of 4 × 105 cells/mL were cultured for 4 h in DMEM medium containing 0.3% FBS, and stimulated by 80 ng/mL of rhIFN-γ (Peprotech, Rocky hill, CT, USA) for 48 h43 (link). The cells were then harvested and incubated with human HLA-DR flow antibody (eBioscience, San Diego, CA, USA) for 30 min at 4 °C and the cells were washed and analyzed by a FACS Calibur flow cytometry (BD Bioscience, San Jose, CA, USA).
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9

Temporal Response of Intestinal Epithelium to Microbial Challenges

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C2BBe1 cells were seeded in 24-well plates at a density of 1 × 105 cells/well in full DMEM culture medium. Once cells reached confluency, they were cultured in serum and antibiotic-free DMEM overnight (12–16 h) followed by co-culture for 3 h with the commensal E. coli K12, the CD-pathobiont AIEC, the pathogen S. typhimurium [all bacteria strains added at MOI 10:1] as recently described (27 (link)), or a pro-inflammatory cytokine cocktail [consisting of recombinant human (rh) TNF-α (20 ng/ml), rh IFN-γ (10 ng/ml), rh IL-1β (10 ng/ml), all purchased from Peprotech], followed by 3× wash in PBS + 1% Pen/Strep, and a further incubation in full culture DMEM media for 2 (T2), 5 (T5), and 13 (T13) h post infection/cytokine treatment. At each time point, cells were washed with PBS and lysates stored at −80°C for RT-qPCR analyses. All conditions were performed in triplicates.
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10

Intracellular Cytokine Staining in Melanoma Cell Lines

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For intracellular cytokine staining, melanoma cell lines were seeded into 6-well plates at 1×106 cells/well in RPMI and individually stimulated with TLR agonists or PMA and Ionomycin overnight in the presence of GolgiStop (1μL/mL, BD Biosciences) at 37°C, at these concentrations: LPS (10μg/mL), CpG ODN (5μg/mL), resiquimod (5μg/mL), imiquimod (25μg/mL), MALP-2 (100ng/mL; Imgenex), poly-ICLC (20μg/mL), FSL-1 (5μg/mL; InvivoGen, San Diego, CA), PMA (60ng/mL) and Ionomycin (1mg/mL; Sigma-Aldrich, St. Louis, MO). These were used with or without rh-IFNγ (1000 IU/mL; PeproTech). After stimulation, cells were detached using Accutase.
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