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67 protocols using ultrascan 1000 ccd camera

1

Negative Staining of pUL51(1-170) Protein

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Copper grids (300 mesh) coated with formvar and continuous carbon (EM Systems Support) were glow discharged in air for 20 s. Three microlitres of 10–100 μM pUL51(1-170) in 20 mM HEPES pH 7.5 or 20 mM tris pH 8.5 was applied to the grid and allowed to adsorb (30 s to 2 min) before wicking away excess solvent with filter paper (Whatman). Grids were sequentially applied to two 30 µL drops of 2% (w/v) uranyl acetate for approximately 3 s and then 30 s, respectively. Excess stain was wicked away using filter paper (Whatman) and grids were allowed to air dry. Images were obtained using a Tecnai Spirit transmission electron microscope (FEI) operating at 120 kV, equipped with an Ultrascan 1000 CCD camera (Gatan). Images were acquired at 30,000–120,000 × magnification with −1 μm defocus and a total electron dose of 20–40 e/A2 across 1 s exposures.
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2

Electron Microscopy of Synaptic Junctions

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We tested the correspondence of light microscopically predicted putative synapses between target cells and axonal varicosities by electron microscopy of selected axon collaterals in osmium-treated sections. This enabled us to determine the probability of determining synaptic junctions based on axonal swellings next to a target profile. Serial sections (70 nm) were cut and mounted on single-slot, pioloform-coated copper grids for conventional transmission electron microscopy. Images were acquired with a Gatan UltraScan 1000 CCD camera. All neurobiotin containing boutons cut at the section plane were followed in serial sections to locate synaptic junctions. We identified synapses as Gray’s type I (often called asymmetrical) and type II (often called symmetrical) based on their fine structure; type I synapses having a thick postsynaptic density, whereas type II synapses are characterized by a thin postsynaptic density (Gray, 1959 (link)).
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3

Structural Characterization of GNNQQNY Fibrils

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Samples of untreated and sonicated fibrils of GNNQQNY (from fibrillation in 10% DMSO with 40 µM ThT) were examined. 5 µl sample was allowed to adsorb onto a Formvar/carbon 300 Mesh Cu Grid (Agar Scientific) for 1 min before blotting and washing with with 5 µl water in a 1 min incubation. Adsorbed material was negatively stained by two 1 min incubations with 5 µl 2% uranyl acetate. TEM was performed using a H-7100 transmission electron microscope (Hitachi) and images were acquired digitally using an axially mounted UltraScan 1000 CCD camera (Gatan). Ribbon widths were measured using the GNU Image Manipulation Program and an average striation width was determined.
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4

High-Pressure Freezing and Freeze Substitution for Transmission Electron Microscopy

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Worms were high pressure frozen in either a Bal-Tec HPM 010 (Bal-Tec AG, Liechenstein) or Leica HMP 100 (Leica Microsystems, Vienna) high pressure freezer and freeze substituted in 1% osmium tetroxide and 0.1% uranyl acetate in acetone over a period of 2 hours by the SQFS method of McDonald and Webb [45] (link). Infiltration of Epon epoxy resin was carried out by 15 minute incubations in 25, 50, and 75% acetone-resin mixtures on a rocker, then three 15 minute incubations in pure resin. Polymerization of resin was for 2 hours in a 100°C oven. Sections of 70 nm thickness were post-stained with 2% uranyl acetate in 70% methanol for 4 minutes and lead citrate (Reynolds, 1963) for 2 minutes. Images were viewed on a Tecnai 12 (FEI Inc., Hillsboro, OR, USA) transmission electron microscope operating at 120 kV, and images recorded with a Gatan Ultrascan 1000 CCD camera (Gatan Inc., Pleasanton, CA, USA). Some high magnification views of microtubule were taken out of focus in order to highlight protofilament patterns [48] (link), [49] (link).
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5

Characterizing P23T hγD Aggregates by TEM

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Aggregates of P23T hγD formed under acidic (pH 3) and neutral (pH 7) conditions were imaged using TEM. Samples (5 μl) were adsorbed on freshly glow discharged 400 mesh size carbon-coated copper grids for 15 s, and the excess was removed by blotting with filter paper. The sample grids were subsequently stained with 1% (w/v) sodium phosphotungstate for 5 s, and blotted. Grids were imaged at 11,000-fold (pH 7) and 21,000-fold (pH 3) magnification using a Tecnai T12 transmission electron microscope (FEI; Hillsboro, OR) operating at 120 kV and equipped with an UltraScan 1000 CCD camera (Gatan; Pleasanton, CA).
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6

Transmission Electron Microscopy of 3T3-L1 Cells

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For transmission electron microscopy, undifferentiated or differentiated 3T3-L1 cells (ntc, shPex16, si-ctrl, and si-Pex16) were cultured on an Aclar film, fixed in 0.1 M phosphate buffer (pH 7.4) containing 2.5% glutaraldehyde and 2% formaldehyde (2 h), post-fixed in 2% OsO4 (2 h), dehydrated in graded series of ethanol, and embedded in a TAAB epoxy resin. Images of 70 nm sections (stained with lead citrate and platine blue) were taken on a FEI Tecnai G2 20 transmission electron microscope (FEI, Eindhoven, Netherlands) with a Gatan ultrascan 1000 CCD camera (acceleration voltage 120 kV). Peroxisomes and mitochondria were counted in ≥35 images per biological replicate.
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7

Visualizing SARS-CoV-2 Antibody Binding

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WT and mutant B/Brisbane/60/2008 viruses in suspension were adsorbed to the surface of transmission electron microscope grids for 15 min. Grids were blocked with a blocking solution (Aurion Electron Microscopy Sciences) for 30 min followed by incubation with the control IgG, 34B5, 46B8 or 46B8 N297G for 1 h at room temperature. Grids were washed and incubated with a biotinylated donkey-anti-human secondary antibody (Jackson ImmunoResearch) for 1 h at room temperature. Grids were washed again and then incubated with 15 nm gold-conjugated streptavidin (Ted Pella) for 1 h at room temperature. Finally, grids were washed, treated with 4% paraformaldehyde to inactivate all virus particles and counter stained with 2% ammonium molybdate for 1 min. Samples were examined under a JEOL JEM-1400 transmission electron microscope at 120kV. Digital images were captured with a GATAN Ultrascan 1000 CCD camera at magnifications from × 1,000 to × 50,000.
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8

Transmission Electron Microscopy of First Trimester Placenta

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For transmission electron microscopy, first trimester placenta was fixed in 0.1 M phosphate buffer (pH 7.4) containing 2.5% glutaraldehyde and 2% formaldehyde (2 h), post-fixed in 2% OsO4 (2 h), dehydrated in graded series of ethanol, and embedded in a TAAB epoxy resin (Gröpl). Ultrathin sections (75 nm) were cut with a Leica UC 7 and stained with lead citrate and platine blue. Images were taken on a FEI Tecnai G2 20 transmission electron microscope (FEI, Eindhoven, the Netherlands) with a Gatan ultrascan 1000 CCD camera (acceleration voltage 120 kV.
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9

Transmission Electron Microscopy of Iloprost-Loaded Liposomes

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Next, 4.5 μL of pure (empty) and iloprost-loaded liposomes (0.6 mg/mL) were placed on carbon-coated copper grids. After a 1-minute incubation, the excess sample was blotted off and replaced by the staining reagent (1% aqueous uranyl acetate). This treatment was repeated twice, each with 30 seconds incubation times. Samples were visualized using an FEI Tecnai® G2 (link) 20 Transmission Electron Microscope (FEI Co, Hillsboro, OR, USA) at 120 kV as acceleration voltage, with the help of a Gatan Ultrascan® 1000 CCD camera (Gatan, Inc., Pleasanton, CA, USA) at 2 k×2 k resolution.
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10

Characterization of Lipid Nanoparticle Formulations

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DNA or mRNA concentration in LNP formulations was determined using a NanoDrop Spectrophotometer (Thermo Fisher Scientific). To calculate mRNA encapsulation efficiency within LNPs, a modified Quant-iT RiboGreen RNA assay (Thermo Fisher Scientific, R11490) was used as previously described26 . LNP hydrodynamic diameter and polydispersity (PDI) were measured using a Zetasizer Nano ZS machine (Malvern Instrument). For analysis of LNP structure using cryogenic-transmission electron microscopy (Cryo-TEM), LNP samples were prepared in a vitrification system (25°C, ~100% humidity). A 3 μL sample of LNP solution was dropped on a lacey copper grid coated with a continuous carbon film and blotted to remove excess sample without damaging the carbon layer. A grid was mounted on a Gatan 626 single tilt cryogenic-holder equipped in the TEM column. Images of LNP samples were recorded on an UltraScan 1000 CCD camera (Gatan).
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