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50 protocols using occludin

1

Immunoblotting of Tight Junction Proteins

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ZO-1 (Proteintech, 21773-1-AP); Occludin (Santa Cruz Biotechnology, sc-133256); Muc-1 (Abcam, ab15481); β-actin (Cell Signaling Technology, 3,700).
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2

Immunohistochemical Analysis of Neurovascular Markers

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For immunohistochemistry, cold saline of 10 ml and paraformaldehyde of 4% in 0.1 M PBS were used to anesthetize mice by perfusing through the heart. Then we harvested the brain quickly, and post-fixed in PFA of 4% for 48 h, and immersed in sucrose solution of 30%. They were storaged at 4 °C prior to be sectioned. Frozen sections were then cut by a thickness of 10 μm. Sections floating freely were washed by phosphate-buffered saline and blocked with Triton X-100 of 0.3% and normal blocking serum in PBS (10%) for 1 h at room temperature. Then they were stained overnight at 4 °C using the Claudin-5 (1:50; Santa Cruz Biotechnology, Santa Cruz, CA, USA), Occludin (1:50; Santa Cruz Biotechnology, Santa Cruz, CA, USA), CD13(1:50; Abcam, Cambridge, United Kingdom), Laminin (1:100; Santa Cruz Biotechnology, Santa Cruz, CA, USA) and β-amyloid (1:50; Santa Cruz Biotechnology, Santa Cruz, CA, USA) primary antibody. The next day, PBS was used to wash sections and sections were incubated for 2 h with Cy3 conjugated anti-mouse IgG and Cy3 conjugated anti-rabbit IgG (1:100; Jackson immune Research Laboratories). Cells were stained by Occludin, Claudin-5, CD13, Laminin (red) or DAPI (blue). They were analyzed through an upright microscope (Ni-E, Nikon Corporation, Tokyo, Japan).
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3

Western Blot and Immunofluorescence Antibodies

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Antibodies used for Western blotting and immunofluorescence assays were as follows: hnRNPM (OriGene), hnRNPF (Santa Cruz Biotechnology, Inc.), hnRNPH1/H2 (Santa Cruz Biotechnology, Inc.), p-Smad3 (Cell Signaling), Smad3 (Cell Signaling), CD44 (R&D Systems and Santa Cruz Biotechnology, Inc.), E-cadherin (Cell Signaling Technology), γ-catenin (Cell Signaling Technology), occludin (Santa Cruz Biotechnology, Inc.), N-cadherin (BD), vimentin (NEOMarkers), β-actin (Sigma-Aldrich), and GAPDH (Millipore). The ESRP1 antibody was a gift from Dr. R. Carstens (University of Pennsylvania).
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Quantifying Protein Expression in Cell Lysates

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Protein concentration was measured with a Pierce BCA protein assay (Thermo Fisher Scientific, IL, USA) according to the manufacturer’s instructions. Proteins in cell lysates were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) as described previously [39 (link)]. After transfer, membranes were blocked by 5% non-fat milk (Cat. M7409, Sigma Aldrich) for 1 h at 20–21°C. Blocked membranes were then incubated overnight at 4°C with primary antibodies from ProteinTech (Rosemont, IL, USA): zonula occludens-1 (ZO-1, 20742–1-AP), ZO-2 (18900–1-AP), ZO-3 (22116–1-AP), occludin (13409–1-AP), claudin-1 (13050–1-AP), claudin-4 (16195–1-AP), Cyp1a1 (13241–1-AP), heme oxygenase-1 (HO-1, 10701–1-AP), Nrf2 (16396–1-AP), beta-actin (20536–1-AP) and lamin A/C (10298–1-AP) or from Santa Cruz Biotechnology (Dallas, TX, USA): AhR (sc-133088). After a 1-h incubation with anti-rabbit IgG, horseradish peroxidase (HRP)-conjugated (#7074, CST) or anti-mouse IgG, HRP-conjugated (7076, CST) secondary antibodies, blot images were captured using a FluorChem E imager (ProteinSimple, San Jose, CA). The intensities were quantified by densitometric analysis using AlphaView software for FluorChem systems.
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5

Claudin-5 Protein Expression Regulation

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Antibodies against claudin-5, ZO-1, occludin (Santa Cruz Biotechnology, Santa Cruz, CA, USA), β-actin (Sigma, St. Louis, MO, USA), horseradish peroxidase-conjugated anti-mouse and anti-rabbit secondary antibodies (Cell Signaling, Danver, MA, USA) were purchased from the indicated vendors. Other used reagents, including claudin-5 siRNA (Dharmacon, Lafayette, CO, USA), haloperidol and thrombin (Sigma) were also commercially purchased. A dose of 10 µM haloperidol was used for in vitro studies after preliminary experiments confirmed a dose-response effect with the most prominent changes in protein expression evident with this dosing. Specific experimental conditions are otherwise detailed in the text.
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6

Immunohistochemical Analysis of Tissue Markers

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Tissues sections were dehydrated with xylene and ethanol gradient, and antigen retrieval and blocking performed. Sections were further labeled with MPO (R&D Systems, Minneapolis, MN, USA). Secondary biotinylated antibody was applied, and slides were incubated at room temperature for 1 h. Signals were detected using Sigma Fast tablets to make the DAB solution (Sigma Aldrich, St. Louis, MO, USA), and the reaction was stopped by placing slides in TBS. For occludin (Santa Cruz Biotechnology, Santa Cruz, CA, USA), and CD63 (R&D Systems, Minneapolis, MN, USA) IHC was performed on paraffin sections using avidin-biotin-peroxidase complex (streptavidin–biotin labeled method) with the Cell and Tissue staining kit (R&D Systems, Minneapolis, MN, USA). The manufacturer’s protocol was followed. For periodic acid-Schiff staining (PAS) of Candida albicans, slides were dehydrated and stained according to manufacturer’s protocol (Sigma-Aldrich, Inc., Burlington, MA, USA).
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7

Signaling Pathway Profiling in Cell Culture

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Procaine, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and bovine serum albumin (BSA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Alexa Fluor® 488 donkey anti-mouse IgG (H+L) antibody and Fluor® 594 donkey anti-rabbit IgG (H+L) antibody were obtained from Life Technologies (Grand Island, NY, USA). iN-fect™ in vitro Transfection Reagent was obtained from iNtRON Biotechnology (Seongnam, Korea). Antibodies against MnSOD, Fibronectin, Vimentin, E-cadherin, N-cadherin, Occludin, Twist, MMP-2, MMP-9, Akt, and β-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against Snail, p-c-Met(Tyr1234/1236), c-Met, p-PI3K(Tyr458), PI3K, p-Akt(Ser473), p-mTOR(Ser2448), mTOR, p-MEK(Ser217/221), MEK, p-ERK(Thr202/Tyr204), and ERK were procured from Cell Signaling Technology (Beverly, MA, USA).
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8

Immunofluorescence Labeling of Cellular Markers

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Primary antibodies against ZO-1 (sc33725, Santa Cruz Biotechnology Inc., Dallas, TX, United States), TNF-α (sc-52746, Santa Cruz Biotechnology Inc., United States), F4/80 (sc-377009, Santa Cruz Biotechnology Inc., United States), occludin (sc133256, Santa Cruz Biotechnology Inc., United States), and p16 (10883-1-AP, Proteintech Group, Inc., IL, United States) were used, and affinity-purified Alexa Fluor 488–conjugated secondary antibody and 594-conjugated secondary antibody (Life Technologies Corporation, Carlsbad, CA, United States) were used. Nuclei were labeled with DAPI (Sigma-Aldrich, United States) and mounted with medium to prevent quenching (Vector Laboratories Inc., United States) following previously described methods (Jin et al., 2017 (link)).
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9

Vascular Barrier Integrity Assay

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The LPS, FITC-labeled dextran, calcitriol and ChIP kit were purchased from Sigma Aldrich (St. Louis., MO). The antibodies of VDR, ZO-1, claudin-5, occludin, HDAC11, acH3, acH4, shRNA kits of VDR and HDAC11 were purchased from Santa Cruz Biotech (Santa Cruz, CA). The reagents for Western blotting and RT-qPCR were purchased from Invitrogen (Carlsbad, CA). The reagents used in this study contained <0.2U endotoxin/10 μg reagents as assessed using the Limulus assay (Limulus amebocyte lysate QCL 1000, Bio Whittaker, Walkersville, MD, USA).
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10

Endothelial Barrier Function Regulation

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Fibrinogen from human plasma (#F3879) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) reagent (#M5655) were purchased from Sigma-Aldrich, St. Louis, MO. DRP1 shRNA(h) lentiviral particles (#sc-43732-V), Control shRNA lentiviral particles-A (#sc-108080), and Polybrene® (#sc-134220) were purchased from Santa Cruz Biotechnology, Dallas, TX, USA. Antibodies were purchased from the following suppliers: against ZO-2 (#2847), phospho-DRP1[S616] (#3455), phospho-DRP1[S636] (#4867), and claudin-5 (#49,564) from Cell Signaling Technology, Danvers MA, USA; against JAM-A (#sc-53623) and occludin (#sc-133256) from Santa Cruz Biotechnology, Dallas, TX, USA; against β-actin (#A5441), and MFN2 (#M6444) from Sigma-Aldrich, St. Louis, MO, USA; against total DRP1 (#611,112) and OPA1 (#612,606) from BD Transduction Laboratory, San Jose, CA, USA; against PECAM-1 (#01004) from BiCell Scientific, Maryland Heights, MO, USA; against FIS1 (#ALX-210–1037) from Enzo Life Sciences, Inc, Farmingdale, NY, USA; and against VE-cadherin (#36–1900) from Invitrogen, Frederick, MD, USA.
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