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Ptarget

Manufactured by Promega
Sourced in United States, Germany

PTarget is a versatile instrument that enables sensitive and quantitative protein detection and analysis. It utilizes a proprietary technology to precisely measure target proteins in complex biological samples. PTarget provides researchers with a reliable and efficient tool for protein-based studies and assays.

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26 protocols using ptarget

1

Silencing and Overexpressing Nostrill in Cells

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For gene silencing, the small interfering RNA (siRNA) duplexes for mouse Nostrill were synthesized using Integrated DNA Technologies. The siRNA sequences targeting Nostrill were as follows: sense, 5′- CGAGAUAGGCUGAGGACUU -3′; antisense, 5′- AAGUCCUCAGCCUAUCUCG -3′. The nonspecific scrambled siRNA sequence UUCUCCGAACGUGUCACGUUU was used for the control. Cells were treated with siRNAs (final concentration, 60 nM) using Lipofectamine RNAiMAX (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions. For Nostrill overexpression, Nostrill cDNA was amplified through PCR, inserted into the PTarget (Promega, Madison, WI) expression vector to generate PTarget-Nostrill, and subsequently sequenced. According to the manufacturer’s protocol, cells were transfected with plasmid DNA using Lipofectamine 2000. Quantitative RT-PCR was used to determine the significant alteration of each target gene.
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2

Luciferase Reporter Gene Vector Construction

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The 5-LO promoter firefly luciferase reporter gene vector pN10, containing the ALOX5 promoter sequence from −778 to +53 (relative to the transcriptional start site), was described previously.9 (link), 10 (link) The pSG5-VDR and pSG5-RXR expression plasmids for the human VDR and RXRα, and the control plasmid p(DR3)4tk-Luc were obtained from C Carlberg (Kuopio, Finland). The pCGN-Smad3 and pCGN-Smad4 expression plasmids were obtained from XF Wang (Durham, NC, USA). The control plasmids p3TP-Lux and pSBE4-Luc were obtained from J Massagué (New York, NY, USA) and B Vogelstein (Baltimore, MD, USA). The mammalian expression vector pTarget and Renilla luciferase control vector pRL-SV40 were purchased from Promega (Mannheim, Germany). Expression vectors for full-length MLL, MLL-AF4 and AF4-MLL were established in the group of Professor Marschalek. All expression cassettes are flanked by the rare-cutting Sfi1 sites and were cloned in a Sfi1 restriction site-modified pTarget vector (Promega).40 (link)
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3

Silencing and Overexpressing Nostrill Gene

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For gene silencing, the small interfering RNA (siRNA) duplexes for mouse Nostrill were synthesized using Integrated DNA Technologies. The siRNA sequences are listed in Supplementary Table 1. Cells were treated with siRNAs (final concentration, 60 nM) using Lipofectamine RNAiMAX (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions. For Nostrill overexpression, Nostrill cDNA was amplified through PCR, inserted into the PTarget (Promega, Madison, WI) expression vector to generate PTarget-Nostrill, and subsequently sequenced. According to the manufacturer’s protocol, cells were transfected with plasmid DNA using Lipofectamine 2000 (Invitrogen, Carlsbad, CA). Quantitative RT-PCR was used to determine the significant alteration of each target gene.
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4

Silencing and Overexpressing Nostrill in Cells

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For gene silencing, the small interfering RNA (siRNA) duplexes for mouse Nostrill were synthesized using Integrated DNA Technologies. The siRNA sequences targeting Nostrill were as follows: sense, 5′-CGAGAUAGGCUGAGGACUU - 3′; antisense, 5′-AAGUCCUCAGCCUAUCUCG - 3′. The nonspeci c scrambled siRNA sequence UUCUCCGAACGUGUCACGUUU was used for the control. Cells were treated with siRNAs ( nal concentration, 60 nM) using Lipofectamine RNAiMAX (Invitrogen, Carlsbad, CA) according to the manufacturer's instructions. For Nostrill overexpression, Nostrill cDNA was ampli ed through PCR, inserted into the PTarget (Promega, Madison, WI) expression vector to generate PTarget-Nostrill, and subsequently sequenced. According to the manufacturer's protocol, cells were transfected with plasmid DNA using Lipofectamine 2000. Quantitative RT-PCR was used to determine the signi cant alteration of each target gene.
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5

Murine pre-B cell CXCR3A overexpression

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Murine pre-B cells L1.2 were cultured in RPMI 1640 containing 1 mM L-glutamine, 1 mM sodium pyruvate, 10% FBS and 50 μM 2-mercaptoethanol. Transfections of L1.2 cells were performed using Amaxa nucleofector (Lonza) (program U-015), according to the manufacturer’s instructions. Cells were plated at 1 × 106/mL and, after 24 h, 4 × 106 cells were nucleofected with 3 mg endotoxin-free plasmids pTarget or pTarget-CXCR3A. The vector pTarget was from Promega and was used as negative control. In pTarget-CXCR3A construct (a kind gift from Alan Wells, Department of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA) CXCR3A (NM_001504.1) was cloned into the EcoRI and SalI sites of pTarget. After 4 h from transfection, in order to enhance CXCR3A cell surface expression, transient transfectants were incubated overnight at 37 °C in medium supplemented with 10 mM sodium butyrate (Sigma-Aldrich). The transfection efficiency was evaluated as GFP expression by flow cytometry using control vector pmaxGFP included in Amaxa nucleofector kit. Cell surface expression of CXCR3A was evaluated by flow cytometry using an anti-human CXCR3 PE-conjugated mAb (Thermo Fisher Scientific).
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6

Recombinant OmpL37 Protein and DNA Vaccine

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The ompL37 PCR product amplified from L. interrogans sv. Copenhageni strain Fiocruz L1-130 genome, as described above, was cloned into the E. coli expression vector pAE [27 (link)] for expression of an OmpL37 recombinant protein (rOMPL37) with an N-terminal 6×His tag. For construction of the DNA vaccine, ompL37 was amplified using the primers OmpL37-pTargeT-For (5ˈ-ACCATGGGAGATCAGATCAACTTAG) and OmpL37-Rev and cloned into the mammalian expression vector pTargeT (Promega, Madison, WI, USA). Both plasmid constructs were confirmed by PCR, restriction digestion and DNA sequencing.
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7

Cloning and Tagging of Human ADAM8 cDNA

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Full-length human ADAM8 cDNA was obtained by reverse transcription and PCR (hA8fw 5’ ATGCGCGGCCTCGGGCTCT, hA8Sto.as 5’ CTAGGGTGCTGTGGGAGCTCCG) from AsPC1 cells. The PCR product was cloned into the expression vector pTarget (Promega) and the sequences of the ADAM8 constructs were verified by DNA sequencing. The C-terminal tagged ADAM8 constructs (EGFP, mCherry and BiPro36 (link)) were generated by PCR using cloning primers (hA8SgfI 5’GAG GCG ATC GCC ATG CGC GGC CTC GGG CTC, hA8MluI 5’ GCG ACG CGT GGG TGC TGT GGG AGC TCC) and ligated into the pCMV6 expression vector (Origene) using the MluI and SgfI restriction sites, respectively.
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8

Pendrin Functional Characterization and Localization

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The pTARGET (Promega Corporation, Madison, WI, USA) vector, containing the cDNA of wild type or mutated human pendrin [9 (link)], was used for functional tests.
The pEYFPN1 vector (Clontech, Mountain View, CA, USA), containing the cDNA of wild type or mutated human pendrin, was used for co-localization and determination of pendrin expression levels via imaging. Following transfection of this construct in cells, pendrin is produced with the enhanced yellow fluorescent protein (EYFP) fused to its C-terminus [27 (link)].
Sequence alterations in the cDNA of pendrin were obtained using the QuikChange® site-directed mutagenesis kit (Stratagene, La Jolla, CA, USA) and the primers listed in the Table S6.
The sequence of all plasmid inserts was verified by Sanger sequencing (Microsynth AG).
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9

Lentiviral LacZ Expression Cassette

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The LacZ expression cassette consists of the EF1-α core promoter, the mouse cytomegalovirus enhancer, a synthetic intron, and the LacZ cDNA from the pCpGfree-LacZ (Invivogen, San Diego, CA, USA), and a SV40 late polyadenylation signal from pTarget (Promega, Madison, WI, USA).
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10

Pseudovirus Production and Screening

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For pseudovirus production, full-length rev-env cassettes were cloned into one of two mammalian expression vectors, pcDNA 3.1 Directional/V5-His-TOPO (Invitrogen, Carlsbad, CA) or pTarget (Promega, Madison, WI). The amplicon sequence selected for cloning was the one closest to a participant’s consensus that was generated from at least five sequences. The resulting clones were sequenced to ensure an exact match to the original amplicon sequence and where cloned inserts differed from the parental sequence, mutagenesis was performed to ensure a match with the parental sequence. Env-pseudotyped viruses were generated by co-transfecting envelope clones with a clade B backbone pSG3ΔEnv (NIH AIDS Research and Reference Reagent Program) in HEK293T cells as previously described [27 (link),28 (link)]. Pseudovirus functionality was determined by measuring luciferase expression after infecting TZM-bl cells (NIH AIDS Research and Reference Reagent Program, ARRRP). Relative luminescence units (RLUs) of ≥100,000 were considered ideal and 30,000 RLUs were accepted in cases where readings were 2.5 x the background; <2.5 times the background were considered negative.
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