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28 protocols using mai tai deepsee laser

1

Calcium Imaging and Spike Probability Analysis

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Slices were submerged in oxygenated aCSF (32°C), which was superfused throughout the experiments. Fluorescence images were captured at 5 Hz with an Olympus FV1000 upright microscope equipped with 25X 1.05NA Ultra-objectives driven by a femtosecond pulsed MaiTai DeepSee laser (Spectra Physics) tuned to 890nm excitation. After acquisition, images were processed through the use of FIJI and FluoroSNNAP (Patel et al., 2015 (link)). ROIs were identified from image stacks, which were motion corrected. The ΔF/F record was calculated by subtracting raw fluorescence values with the mean of the lower 50% of previous 10 sec values and dividing by the mean of the lower 50% of previous 10 sec values (Patel et al., 2015 (link)). This ΔF/F record was then used to infer the underlying spike probability using the algorithms described by Vogelstein et al. (2010) (link).
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2

In Vivo Two-Photon Imaging of Mouse Brain

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Mice were head-fixed and placed under a two-photon microscope (Denk et al., 1990 (link)). Anesthetized mice were maintained on a heating pad to keep the body temperature at 36°C. The microscope (Scientifica Multiphoton VivoScope or custom designed by Independent NeuroScience Services, UK) was coupled with a MaiTai DeepSee laser (Spectra-Physics, Santa Clara, CA, USA) tuned to 940 nm (<30 mW average power on the sample) for imaging. Images (512 × 512 pixels) were acquired with a resonant scanner at a frame rate of 30 Hz using a 16× 0.8 NA water-immersion objective (Nikon).
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3

Measuring Microglial Responses to CNO Gradients

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Experiments were performed at room temperature, and slices were maintained in oxygenated ACSF at a flow rate of 1-3 mL/minute. A pipette containing 5 mM CNO or aCSF was moved beside microglia using a micromanipulator (Scientifica). A CNO gradient was created by passive diffusion of CNO molecules without puffing. The pipette was visualized by 0.05 mg/mL Alexa Fluor 594 carboxylic acid (Invitrogen). EYFP labeled microglia were imaged by a multiphoton microscope (Scientifica) equipped with a Mai-Tai DeepSee laser (Spectra Physics) tuned to 920 nm with a 16x water immersion lens (NA: 0.8, Nikon). EYFP signal was passed through a 525/50 filter, and Alexa Fluor 594 signal was passed through a 630/75 filter (Chroma). The laser power was maintained at 6 mW or below. Images were collected at 1 Hz frame rate at 512 × 512 pixel resolution for 15 minutes. To quantify the microglial responses to CNO gradients, we measured the number of microglial processes entering from the outer area ( (0), 70 mm in diameter) into the inner area ( ( ), 35 mm in diameter) surrounding the tip of the pipette over time 52 . The microglial response at any time point is given by ( ) = ( ( ) -(0)) / (0).
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4

In Vivo Kidney Imaging Technique

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While under sedation, vertical flank incisions were made to externalize left kidneys for imaging10 (link). In some cases, the internal jugular vein was cannulated for intravenous infusions of dyes. Body temperature was controlled, as exteriorized kidneys were positioned inside a glass-bottom dish containing saline, which was set above a 60× water-immersion objective. Fluorescent micrographs were collected using an Olympus (Center Valley, PA) FV 1000-MPE Microscope equipped with a Spectra-Physics (Santa Clara, CA) MaiTai Deep See laser, with dispersion compensation for two-photon microscopy, tuned to 770–860 nm excitation wavelengths. The system was mounted on an Olympus IX81 inverted microscope, was also equipped with dichroic mirrors to collect blue, green, and red emissions and two external detectors for two-photon imaging.
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5

Two-Photon Imaging of Parasite Dynamics

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Mice were anaesthetized and prepared for intravital microscopy as described previously [39 (link)]. Two-photon imaging was performed with a W Plan-Apochromat 20x/1,0 DIC VIS-IR objective (Zeiss) on a LSM 700 confocal laser scanning microscope (Zeiss) and a Mai Tai DeepSee laser (Spectra-Physics) tuned at 920 nm. For analysis of parasite proliferation in vivo, the emitted mKikume signal and second harmonics were split with 625 nm long pass, 495 nm long pass, and 555 nm long pass dichroic mirrors and filtered with 470/20 (second harmonics), 525/50 (mKikume green) and 600/40 (mKikume red) nm bandpass filters before collection with nondescanned detectors. For intravital analysis of cell-to-cell transmission, ECFP, EYFP and DsRed fluorescence as well as harmonics were split with 560 nm long pass, 470 nm long pass, and 520 nm long pass dichroic mirrors and filtered with 600/40 (DsRed), 470/20 (second harmonics), 506/20 (ECFP) and 543/20 (EYFP) nm bandpass filters. Typically, imaging volumes of 0.8 mm3 for automated analysis were obtained by collecting 3–4 μm spaced z stacks using the ZEN acquisition software (Zeiss). Images were color corrected using the channel arithmetics function, superimposed and analyzed using the Imaris software (Bitplane), 3D projections and slices were extracted using the Fiji software (NIH, http://rsb.info.nih.gov/ij/).
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6

Two-Photon Imaging of Calcium Dynamics

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Two-photon microscopy (Olympus FVMPE-RS two-photon microscope; 30.0 frames / s; 512 × 512 pixels / frame) was used to record calcium activity in ChP explants or in vivo from mice expressing GCaMP6f in epithelial cells (in FoxJ1-Cre::Ai95D mice). Imaging and analyses were performed as described14 (link) with a 25X magnification, 8 mm working distance objective. Laser power measured below the objective at 940 nm was 50–60 mW, using a Mai Tai DeepSee laser (Spectra-Physics). Plasma (using citrate as anti-coagulant instead of EDTA, same protocol as described above) was delivered to explants by topical application from a glass capillary needle and serum was delivered to the lateral ventricle of live mice during imaging through the injection cannula. Serum was prepared by collecting blood using the same approach as described above, incubating on ice for 30 minutes and then centrifuging for 10 minutes at 5,000 g twice to separate the supernatant. For infusions via microinjection cannulas during in vivo two-photon imaging, approximately 30 μl aCSF or serum was delivered by syringe pump at a rate of 5 μL / min. Chemicals used on explants include: LiCl (30 mM x15 min), BAPTA-AM (5 mM), 2-APB (50 μM), EGTA (0.5 mM), and EDTA (by collecting blood into EDTA-coated tubes; Cat# BD 365974).
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7

Two-Photon Imaging in Tree Shrew Cortex

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Imaging experiments were performaed using a Bergamo II Series Microscope (Thorlabs) using 920 nm excitation provided by a Mai Tai DeepSee laser (Spectra-Physics) running Scanimage 2015 or 2018 (Vidrio Technologies) and an FPGA module (PXIe-6341, FlexRIO, National Instruments). Average excitation power at the objective (16x, CF175, Nikon Insttuments) ranged from 40 to 100 mW. Images were acquired at 15 Hz (512x512 pixel field of view ranging from 1.19 to 1.85 µ/pixel) Two-photon frame triggers from Scanimage and events denoting visual stimuli and phases of behavioral trials were recorded using Spike2 (CED, Cambridge, UK).
In 6 tree shrews, imaging was carried out across training sessions. Prior to data acquisition, the imaging site was located by matching the FOV to known anatomical features from prior recordings, such as blood vessel patterns and somata locations.
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8

In Vivo Two-Photon Microscopy Imaging

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Imaging experiments were performed using a B-Scope (Thorlabs) either with 910 nm excitation provided by an InSight DS+ (Spectra-Physics) or with 910 nm excitation provided by a Mai Tai DeepSee laser (Spectra-Physics), running Scanimage 4.1 or 4.2 (Vidrio Technologies)32 (link). Average excitation power at the exit of the objective (16x, CFI75, Nikon Instruments) ranged from 16 to 40 mW. Images were acquired at 15–30 Hz (512x512 pixels, field of view (FOV) ranges from 0.44x0.44 to 1.1x1.1 mm2). Two-photon frame triggers from Scanimage and events denoting stimulus onset, stimulus offset, and stimulus identity were recorded using Spike2 (CED; Cambridge, UK). In a typical imaging session lasting about 16 hours, 2–4 different fields of view were sampled and at each site, data were acquired at 2–4 different depths with at least 35 microns separation, ranging from 50 and 350 microns below the cortical surface. Z-stacks of individual fields of view were acquired by averaging 50 frames per plane using 1μm steps from the surface to about 350 microns deep.
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9

Intravital Imaging of Kidney Oxidative Stress and Leukocyte Adhesion

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Anesthetized animals were placed on the microscope stage with the exposed intact kidney placed in a coverslip-bottomed cell culture dish bathed in warmed (37°C) isotonic saline, as previously described [38 (link), 39 (link)]. Live animal imaging was performed using an Olympus FV1000-MPE confocal/multiphoton scanner. The scanner is equipped with a Spectra Physics Mai Tai DeepSee laser and 12-bit gallium arsenide detectors. For experiments examining kidney oxidative stress, carboxy-2′,7′-dichlorodihydrofluorescein diacetate (carboxy-DCFDA; Thermo Fisher Scientific/Invitrogen, Carlsbad, CA) was administered intravenously (7 mg/kg) 20 minutes prior to intravital imaging as previously described [35 (link)]. For experiments examining leukocyte adhesion, a fluorescein isothiocyanate- (FITC-) conjugated dextran (500 kDa; TDB Consultancy AB, Uppsala, Sweden) was injected intravenously at the time of intravital imaging to define the vascular space as previously described [39 (link)], and leukocyte adhesion to the microvascular endothelium was analyzed as previously described [40 (link)]. Quantitative analysis of acquired images was performed with Metamorph software.
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10

In Vivo Two-Photon Microscopy Imaging

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Imaging experiments were performed using a B-Scope (Thorlabs) either with 910 nm excitation provided by an InSight DS+ (Spectra-Physics) or with 910 nm excitation provided by a Mai Tai DeepSee laser (Spectra-Physics), running Scanimage 4.1 or 4.2 (Vidrio Technologies)32 (link). Average excitation power at the exit of the objective (16x, CFI75, Nikon Instruments) ranged from 16 to 40 mW. Images were acquired at 15–30 Hz (512x512 pixels, field of view (FOV) ranges from 0.44x0.44 to 1.1x1.1 mm2). Two-photon frame triggers from Scanimage and events denoting stimulus onset, stimulus offset, and stimulus identity were recorded using Spike2 (CED; Cambridge, UK). In a typical imaging session lasting about 16 hours, 2–4 different fields of view were sampled and at each site, data were acquired at 2–4 different depths with at least 35 microns separation, ranging from 50 and 350 microns below the cortical surface. Z-stacks of individual fields of view were acquired by averaging 50 frames per plane using 1μm steps from the surface to about 350 microns deep.
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