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26 protocols using hifi mmlv cdna kit

1

Quantifying PER2 Gene Expression

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Extract total RNA from cells by TRIzol (Lot: 183010, Ambion, USA) and reverse transcription of RNA into cDNA with a HiFi-MMLV cDNA Kit (CWBIO, Cat: CW0744M, Lot: 40420). Finally, use UltraSYBR Mixture to detect the relative expression of the target gene (Cat: CW0957H, Lot: 60409, CWBIO) with a real-time quantitative PCR system (BIO-RAD, CFX96TM Real-Time System, C1000TM Thermal Cycler). We purchased the primers from Biotech Bioengineering (Shanghai) Co., Ltd. Simultaneously, the sequences of primers are as follows:
PER2: forward: 3'-AAATCCGCTACCACCCCTTC-5'; reverse: 5'-AAGGCAGCAAAGCTGACTCTC-3'
GADPH: forward: 3'-GGAGCGAGATCCCTCCAAAAT-5'; reverse: 5'- GGCTGTTGTCATACTTCTCATGG-3'
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2

Plasma RNA Extraction and qPCR Analysis

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Total RNA was extracted from plasma samples from 24 PD patients (Dnr_8 to Dnr_31) and 11 healthy controls (Dnr_35 to Dnr_45) using an exoRNeasy Serum/Plasma Maxi Kit (50) (Qiagen, Redwood City, CA, USA; cat. #77064). The DNA in the RNA residue was digested using a DNase I kit (CW Bio, Cambridge, MA, USA; cat. #CW2090). The RNA was reverse transcribed into complementary DNA (cDNA) using a HiFi‐MMLVcDNA kit (CW Bio; cat #CW0744) according to the manufacturer's instructions. PCR was performed on the cDNA using UltraSYBR Mixture (With ROX; CW Bio; cat #CW0956). No electrophoresis was performed because of a low RNA yield. β‐actin was used as a housekeeping gene. Data were calculated as relative expressions according to the ΔΔC(t) principle.18, 19 The primer sequences were 5′‐GCA AGC CTA ACT CAA GCC ATT‐3′ and 5′‐TCA AGC CGA CTC TCC ATA CC‐3′ for GAS5:46; and 5′‐AGG TGG GAG GAT CGC TTG A‐3′ and 5′‐ACC ATA TTG ATG CCG AAC TTA GTG‐3′ for lnc‐MKRN2‐42:1.
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3

Quantitative Real-Time PCR Analysis

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The total RNA was extracted by Trizol reagent (TIANGEN, DP419). Reverse transcription was performed using HiFi-MMLV cDNA Kit (Cwbio, CW0744M) to synthesize the cDNA template. PCR primers used for PCR amplification were obtained from Sangon Biotech (Chengdu, China). Quantitative real-time PCR was performed using SYBR Green Kit (Cwbio, CW2601H) in LightCycler 480 (Roche). The reaction program contained 40 cycles of denaturation at 95°C for 15 s and annealing at 60°C for 1 min. The RNA expression levels were calculated by the 2−ΔΔCt(Quantitation−ComparativeCT) method based on the normalization of GAPDH values. The primer sequences used in our study are as follows: TP53: Forward primer: 5′-AGTGGGAATCTTCTGGGACG-3′, Reverse primer: 5′-TCTTTTGCTGGGGAGAGGAG-3′; GAPDH: Forward primer: 5′-CAAGGCTGAGAATGGGAAGC-3′, Reverse primer: 5′- GAAGACGCCAGTAGACTCCA-3′.
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4

Quantifying KGF Expression in Lung Samples

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Total RNA in lung samples was extracted with the ultrapure RNA extraction kit (Cat# CW0581, CWbio Co., Ltd.) and was reverse-transcribed into cDNA using a HiFi-MMLV cDNA kit (Cat#CW0744, CWbio Co., Ltd.). The RNA expression levels were detected by Ultra SYBR Mixture (with ROX) (Cat#CW0956, CWbio Co., Ltd.) according to the manufacturer's instruction. PCRs were performed in Line Gene type 9600 Plus Real-Time PCR system (Bioer Technology Co. Ltd., Hangzhou, China). The primer sequences were as follows: β-actin (FW 5′-GCCTTCCTTCTTGGGTAT-3′ and RV 5′-GGCATAGAGGTCTTTACGG-3′) and KGF (FW 5′-TGCTTCCACCTCGTCTGTC-3′ and RV 5′-TCCTTCCATGTAGTCATAACTTCTG-3′). The amplification program was 95°C for 10 min followed by 45 cycles of 95°C for 15 s and 60°C for 60 s. The quantity of specific mRNA was normalized to the expression level of internal control β-actin mRNA. Gene expression was calculated using the 2ΔΔCt method.
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5

RNA Extraction, cDNA Synthesis, and qPCR Analysis

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Total RNAs were extracted using TRIzol (Invitrogen). cDNA synthesis was carried out using a HiFi-MMLV cDNA Kit (CWBio, Co., Ltd.). Quantitative PCR was completed using the SYBR Premix ExTaq Reverse Transcription PCR kit (Takaka, Dalian, People's Republic of China). U6 was used for internal control. The 2−ΔΔCt method was used for expression calculation.
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6

Expression of vgb gene in NK strains

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RT-PCR was undertaken to test expression of the vgb gene between NK-1 and NK-PV strains. Cells were harvested for RNA extraction after 16 h of cultivation in LB medium. The commercial RNApure Bacteria kit (Cwbio, Beijing, China) was used to extract total RNA. cDNA was obtained by reverse transcriptional synthesis with a HiFi-MMLV cDNA kit (Cwbio). Primers VG-F and VG-R were used to determine gene transcription.
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7

Neural Tissue RNA Extraction and qPCR

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Total RNA was extracted from fresh-frozen neural tissue using an Ultrapure RNA Kit (CWbio Co. Ltd., China) and then reverse-transcribed with a HiFi-MMLV cDNA Kit (CWbio Co. Ltd., China). Real time PCR was performed on a Bioer line gene PCR instrument (BIOER, China) using Invitrogen primers. The PCR amplification procedure includes 95°C for 10 min, followed by 45 cycles of 95°C for 15 s and 59°C for 60 s. Data were normalized to Beta actin.
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8

Adenoidal Epithelial Cell Gene Expression

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We measured expression levels of the molecules listed above in the isolated epithelial cells of adenoids by using real-time quantitative polymerase chain reaction (RT-qPCR). RT-qPCR and data analysis were performed using an ABI7500 (Applied Biosystems, Foster, CA, USA) according to the manufacturer's instructions. Total RNA was extracted from the isolated adenoidal epithelial cells using TRIzol Reagent (CW0580, CWbio. Co. Ltd., Beijing, China). Reverse transcription was performed using a HiFi-MMLV cDNA Kit (CW0744, CWbio. Co. Ltd., China). One microgram of total RNA was reverse transcribed in a total volume of 10 μl (about 1 μg). Expression of isolated mRNA was normalized to RNA loading for each sample using β-actin (NM_001101) mRNA as an internal standard. All primers were commercially synthesized by Invitrogen (USA), and their sequences are shown in Table 2. PCR conditions for amplifications were 45 cycles at 95°C for 15 s, 60°C for 60 s, followed by melting curve analysis. All samples were measured in triplicate. The relative levels of each gene mRNA transcripts to β-actin were determined using the 2-ΔΔCt method.
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9

RNA Extraction and Real-Time PCR Protocol

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The RNA extraction and real-time PCR was conducted according to the method described by Nasiri-Ansari et al. [26 (link)]. The total RNA in liver and small intestine was extracted with TRIzon reagent (CW0580, Cwbio, Beijing, China), and its concentration was determined by ultra-low volume spectrometer (BioDrop μLite. Biochrom Ltd. Shanghai, China). The RNA samples were immediately reverse transcribed into cDNA by a HiFi-MMLV cDNA Kit (CW0744, Cwbio, Beijing, China). The quantitative real-time PCR (RT qPCR) was conducted in a Real-Time PCR Detection System (CFX96, Bio-Rad, Hercules, CA, USA). BeyoFast™ SYBR Green qPCR Mix (2X) (D7260-5 mL, Beyotime, Shanghai, China) was used to amplify the target fragment. The primers used in this study and their target genes are listed in Table 1. The PCR procedure used in this study was as follows: pre denaturation (95 °C) for 2 min, followed by 40 cycles, denaturation (95 °C) 15 s, annealed (55 °C) 15 s and extension (72 °C) 30 s. At the end of the PCR procedure, the melting curve was observed at 65 °C to 95 °C to evaluate the specificity of the product. β-actin gene was used as housekeeping gene. The relative expression level of genes were normalized to that of β-actin and calculated according to the 2−ΔΔCT approach.
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10

qRT-PCR Analysis of hTERT Expression

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Total RNA was isolated from cells using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). The concentration and quality of RNA were determined using an Agilent 2100 Analyzer and a NanoDrop
2000 microspectrophotometer. Complementary DNA was reverse transcribed from total RNA using a HiFi-MmlV cDNA kit (CWBIO, Jiangsu, China), and qRT-PCR for gene expression was performed on an
ABI 7500 Sequencing Detection System (Applied Biosystems, Carlsbad, CA, USA) with the UltraSYBR One Step qRT-PCR Kit (CWBIO, Jiangsu, China). The specific primers were designed as follows:
5’-TATGCCGTGGTCCAGAAGG -3’ (hTERT, sense), 5’-CAAGAAATCATCCACCAAACG -3’ (hTERT, antisense), 5’-CGGCACAGTCAAGGCAGAGAAC -3’ (GAPDH, sense), and 5’-CCACATACTCAGCACCAGCATCAC -3’ (GAPDH,
antisense).
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