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8 protocols using 10k mwco

1

Thermodynamic analysis of PXR-ligand interactions

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Purified PXR(130-434)-SRC-1 was dialysed overnight against Tris-HCl 20 mM, pH 8.5, NaCl 200 mM, TCEP 1 mM using 10 kDa molecular weight cut-off dialysis cassettes (Slide-A-Lyzer 0.5 ml 10 K MWCO, Thermo Scientific). Protein concentration was determined spectrophotometrically (ɛ280 nm=26,210 l mol−1 cm−1). Duplicate experiments were performed on Microcal ITC200 (Malvern) operating at 25 °C. Titrations were carried out in Tris-HCl 20 mM, pH 8.5, NaCl 200 mM, TCEP 1 mM supplemented with 0.05% Tween 20 and 5% DMSO (syringe, sample and reference cells). PXR (5 μM) was disposed in 200 μl cell and compounds were delivered from 40 μl syringe. Compound solutions were set to 300 μM when tested individually (Fig. 5b,c), 50 μM each when used simultaneously (Fig. 5f) and 50 μM (EE2, Fig. 5d) or 200 μM (TNC, Fig. 5e) when tested after pre-incubation of PXR with 50 μM TNC or EE2, respectively. Heat exchanges were monitored throughout titrations consisting of 19 injections (one time 0.5 μl followed by 18 times 2 μl) of compound solutions into the cell containing PXR solution. Data analysis and thermodynamic parameter fitting used Microcal Origin software (Malvern).
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2

Protein Isolation and Analysis Techniques

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We obtained cycloheximide, diethylene triamine pentacetate acid (DTPA), N-ethylmaleimide (NEM), iodoacetamide, catalase, palmitic acid, fatty acid-free bovine serum albumin (BSA), protein inhibitors, 2′, 7′-Dichlorofluorescein diacetate (DCFH-DA) fluorescent dyes, Oil Red O, anti-Myc-coupled agarose beads from Sigma; high capacity NeutrAvidin agarose, mini dialysis devices, 10K MWCO, and ECL from ThermoFisher Scientific. We obtained Ni-NTA agarose beads from Qiagen; MG132 from Calbiochem; M-MLV Reverse Transcriptase from Promega; KOD Hot Start DNA Polymerase from Novagen; Taq polymerase, dNTPs, and X-Gal from TaKaRa; Quick change Site-Directed Mutagenesis kit from Stratagene; Cysteine Sulfenic acid probe DCP-Bio1 from Millipore; hydrogen peroxide (H2O2) from Sinopharm Chemical Reagent Co.,Ltd.; hematoxylin from Beyotime.
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3

Thymoquinone Release Kinetics in GIT Conditions

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TQ release was investigated in pH 1.0, pH 6.0 and pH 7.4 to simulate the gastrointestinal tract (GIT) pH conditions. Lyophilized TQ-PLGA-PF68 nanoparticles (10 mg) were placed in the dialysis tubing (10 K MWCO, Thermo Scientific, Waltham, MA, USA) and left to submerge in pH 1.0 (0.1 N HCl solution). Later, they were placed in pH 6.0 (PBS solution) and pH 7.4 (PBS solution). Samples were placed in a thermostatic rotary shaker with a speed of 100 rpm at 37 °C. Drug release was measured by sampling 1 mL of the outer media every 30 min intervals. An equal volume of fresh media was then added to replenish total media. The concentration of TQ released from TQ-PLGA-PF68 nanoparticles was measured with a UV spectrophotometer at 257 nm. Results are expressed as a percentage of the cumulative amount of TQ released versus time.
Cumulative drug release %=MtMθ×100
Mt is the amount of drug released at time t, and Mθ is the initial drug in nanoparticle formulation. The drug release data were averaged based on three different measurements.
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4

In vitro Drug Release Profiling of Sphingosomes

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The in vitro drug release of PE from the prepared sphingosomes was studied using the dialysis method. This was started by soaking the dialysis cassettes (10K MWCO, Thermo Fisher Scientific, USA) in the dissolution medium (PBS pH 7.4) for 2 min. before their use. One milliliter of the sphingosomal dispersion was then centrifuged in the cooling micro-centrifuge at 15000 rpm for 30 min. at 4°C. The separated PE sphingosomes were then dispersed in 1mL of D.W. and placed inside the dialysis cassette which was afterward immersed in 300 mL PBS pH 7.4. The temperature was adjusted to 37 ±0.5°C and the stirring rate to 100 rpm. Samples of 3mL were collected at predetermined time intervals (1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, and 12 hrs) with the replacement of the same volume of fresh medium (PBS pH 7.4) to maintain the sink conditions [23 (link)]. The amount of drug released with time was analyzed using the HPLC system (1525, Waters, Singapore) at λmax 275 nm as per the PE calibration curve in PBS pH 7.4.
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5

In Vitro Drug Release Analysis

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In vitro drug release was examined with the direct dialysis technique [60 (link)]. The release of DXI from DXI-NLC (n = 3) was estimated against the same concentration of DXI (n = 3) by placing the samples in a 500 µL dialysis cassette (10K MWCO, Slide-A-LyzerTM, Thermo Scientific, Rockford, IL, USA). The release medium was prepared with sodium citrate and urea to improve the hydrophilicity of DXI in a proportion of DXI:S sodium citrate: urea 1:3:7, as explained elsewhere [41 (link)]. The release medium was placed under magnetic stirring and incubated at 37 °C. At various time intervals, samples of 400 µL of release medium were collected and replaced by 400 µL of clean release medium. Collected samples were analyzed with RP-HPLC [39 (link)]. The amount of DXI released was plotted as cumulative drug release against time (h) in Graph Pad Prism version 5.0, and fitted to the most common biopharmaceutical equations (Higuchi, Korsmeyer–Peppas, hyperbola and first-order equation).
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6

Synthesis and Purification of γ-PGA-GMA

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First, 40 g of γ-PGA powder (average molecular weight 1250 kDa, Vedan, Taichung, Taiwan) was added into 400 mL of deionized water and stirred at 50 ℃ to obtain a 10% γ-PGA solution. Next, 19.2 mL of glycidyl methacrylate (GMA, Sigma-Aldrich, St. Louis, MO, USA) was added to the solution and stirred for 6 h at 60 °C for 30 min. The mixture was then centrifuged at 8000 rpm and 40 ℃ for 30 min. Subsequently, the supernatant was collected and placed into a dialysis bag (10K MWCO, Thermo Fisher Scientific, Waltham, MA, USA) for 6 h of dialysis. The γ-PGA-GMA was collected, lyophilized for 24 h, and stored until further usage. Prior to usage, the γ-PGA-GMA was sterilized with 30 min of UV light.
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7

Synthesis and Characterization of γ-PGA-GMA

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γ-PGA-GMA was prepared according to our previously published methods.22 (link) First, 40 g of γ-PGA powder (average molecular weight 1250 kDa, Vedan, Taichung, Taiwan) was added to 400 mL of deionized water and stirred at 50 °C to obtain a 10% γ-PGA solution. Next, 19.2 mL of glycidyl methacrylate (GMA, Sigma-Aldrich, St. Louis, MO, USA) was added to the solution and stirred at 60 °C for 30 min. The mixture was then centrifuged at 8000 rpm and 40 °C for 30 min. Subsequently, the supernatant was collected and placed into a dialysis bag (10K MWCO, Thermo Fisher Scientific, Waltham, MA, USA) for 6 h of dialysis. The γ-PGA-GMA was collected and lyophilized for 24 h, then stored for further usage. Prior to usage, the γ-PGA-GMA was sterilized with UV light for 30 min. The number and type of chemical functional groups in the molecule were determined via NMR analysis. The γ-PGA-GMA samples were ground into powder and fully dissolved in 0.5 mL D2O. 1H NMR characterization was performed by an amx-500 nuclear magnetic resonance instrument of Bruker Company, Germany, with a temperature of 25 °C.
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8

Oxidation of LDL for Cell Studies

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EDTA-free LDL (LEE Biosolutions, 360-10-0.5) was diluted in PBS to make a final concentration at 1 mg/ml. 30 µl freshly made 1 mM CuSO4 (FisherChemicals, C493-500) was added to 1ml 1mg/ml LDL, and the mix was put on an orbit shaker at 37 °C for 4 h protected from light. Reaction was stopped by adding 1% (w/v) EDTA (Sigma, E9884). After that, oxLDL was dialyzed using a dialysis device with 10K MWCO (Thermo Scientific, 88404) and stored at 4 °C for no more than one week before use. The oxidation of LDL was measured by TBARS Assay Kit (Cayman, 10009055) as about 80 nmol MDA/mg LDL protein.
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