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23 protocols using yeastmaker yeast transformation system

1

Stress Tolerance Assay of SbMYB44 in Yeast

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The SbMYB44 ORF was cloned in the EcoRI and XhoI sites of the yeast expression vector pYES2 (Invitrogen). The plasmids of pYES2-SbMYB44 and vector alone were transformed separately in yeast strain W303 using Yeastmaker yeast transformation system (Clontech). A stress tolerance assay of recombinant yeast cells was performed as described by Li et al. (2014) (link) with minor modifications. Yeast cells having pYES2-SbMYB44 and vector alone were grown in SD/-Ura broth for 24 h at 30 °C. After adjusting the OD600 to 0.4, 500 µL of culture was added to 10 mL of induction medium (SD/-Ura broth supplemented with 2 % galactose) and grown for 36 h to promote the expression of SbMYB44 gene. The cultures were diluted to an OD600 0.6, and 500 µL of culture was inoculated in 10 mL SD/-Ura containing 2.5 M NaCl, 5.0 M NaCl, 15 % polyethylene glycol (PEG 6000) equivalent to −0.295 MPa of osmotic potential and 30 % PEG 6000 equivalent to −1.027 MPa of osmotic potential and incubated at 30 °C for 36 h. After stress treatment, the cultures were serially diluted (100, 10−1, 10−2, 10−3, 10−4) and 7 µL from each dilution were spotted on SD/-Ura medium and incubated at 30 °C for 3 days.
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2

Pulldown Assay for Protein Interactions

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Human fetal hepatic MATCHMAKER cDNA library and YEASTMAKER Yeast Transformation system were purchased from CLONTECH Laboratories. Pierce GST Protein Interaction Pull-Down Kit and Pierce Human In Vitro protein expression kit for DNA templates were purchased from Thermo scientific. Mouse anti-MT-1X monoclonal antibody was purchased from Novus Biological, CO., Rabbit anti-FHL3 polyclonal antibody was purchased from ProteinTech Group, Inc.
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3

Yeast Two-Hybrid Screening of Arabidopsis Proteins

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The Arabidopsis Mate and Plate Library was screened using yeast
mating method according to the Matchmaker Gold Yeast Two-Hybrid System
manufacturer’s protocol (Clontech). Briefly, full-length NSswas amplified and inserted into the pGBKT7 vector by Gateway recombination, then
the constructs was transformed into yeast strain Y2HGold and testing for
autoactivation by using the Yeastmaker Yeast Transformation System (Clontech).
Then the Arabidopsis Mate and Plate Library and BD-NSs yeast
clones were mated in YPDA medium. After incubation, isolated destination clones
were selected from diploid-selection medium (SD/-Leu/-Trp). These primary
positive interactors were secondary screened on medium plates
(SD/-Leu/-Trp/-His) and third time screened on medium plates (SD/-Leu/-Trp/
-His/X-a-Gal). PCR and BLAST searches were used to obtain sequence information
on corresponding AD- and BD-clones per colony.
The interaction between TSWV NSs and AtMYCs were confirmed according to the
manufacturer’s protocol (Clontech). The pGBKT7-NSs and pGAD424-MYCs constructs
were co-transformed into yeast strain Y2HGold. Yeast cotransformed with the
indicated plasmids was spotted onto synthetic medium (SD-Leu-Trp-His) containing
10 mM 3-amino-1,2,4-triazole and 0.04 mg/mL X-α-gal. The empty vectors pGBKT7
(BD) and pGADT7 (AD) were used as negative controls [38 (link)].
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4

Yeast Two-Hybrid Assay: FIO1 Interactors

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To construct AD‐FIO1, the coding sequence of FIO1 was amplified and ligated into pGADT7 (Clontech). The coding sequences of MTA, MTB, HAKAI, and FIP37 were amplified and ligated into pGBKT7 (Clontech). The yeast two‐hybrid assay was performed with the yeast strain AH109 using the Yeastmaker Yeast Transformation System according to the manufacturer's instructions (Clontech).
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5

Yeast Transformation Using PEG/LiAc Method

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Clontech’s YeastMaker Yeast Transformation System was
used according to the manufacturer’s protocol for all
transformations of yeast cells. A PEG/LiAc (polyethylene
glycol 3350/lithium acetate)-based method was applied
for the preparation and transformation of competent
yeast cells. For the cotransformation of the bait and prey
vectors, 0.2 µg of each vector was used together with 5 µL
of herring testes carrier DNA (10 mg/mL).
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6

Yeast-Two-Hybrid Protein Interaction Assay

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The Yeastmaker yeast transformation system (Clontech) was used to assay protein–protein interactions. The coding sequences of AvrPib and AVR-Pia without the signal peptide were inserted into the plasmid pGBKT7 as the bait vectors, and the coding sequences of RGA5 and its mutants were cloned into the plasmid pGADT7 as the prey vectors. The prey vectors and the corresponding bait vectors were cotransformed into the yeast strain Y2H AH109, following the manufacturer’s instructions. The transformants were cultured on SD/-Trp/-Leu plates and SD/-Trp/-Leu/-His plates with 3-amino-1,2,4-triazole for 3 d at 30 °C.
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7

Yeast Two-Hybrid Assay for Protein-Protein Interactions

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As for the Yeast two-hybrid assay, the full coding sequence of RAPATOR1, S6K1, S6K2 and TAP46 were cloned into pGBKT7 vector, and ACS2, ACS4 and ACS7 (Representing three Type of ACS, respectively) were cloned into pGADT7 vector, by seamless cloning using an In-Fusion HD Cloning Kit (Clontech, Mountain view, CA, USA) following the user’s manual. Yeast two-hybrid assay was performed following the manual’s instructions for the Yeastmaker Yeast Transformation System (Clontech, CA, USA). Different plasmids of pGBKT7 and pGADT7 combinations were co-transformed into the Y2H Gold strain via the PEG/LiAc transformation procedure. Yeast cells co-expressing the constructs were grown on basic media (SD-W-L), and then selected selective media (SD-W-L-H-A) with 125 μg/L Aureobasidin A and 40 mg/L X-α-gal. Primers used for construction of vector are listed in Supplementary Table S2c.
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8

Yeast Two-Hybrid Assay for HmoWRKY42 Interactors

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Co-transform the constructed pGBKT7-HmoWRKY42 and mixed plasmid of pGADT7-HmoWRKYs into yeast and using Y2H experiments to find HmoWRKYs proteins that bind to HmoWRKY42. These vectors were transformed into Y2H cells according to the instructions of the Yeastmaker™ Yeast Transformation System (Clontech, Mountain View, CA, USA) (www.clontech.com (accessed on 25 July 2022)). Yeasts were grown in selective media lacking Leu and Trp (-Leu/-Trp; Clontech) and lacking Ade, His, Leu, and Trp (-Ade/-His/-Leu/-Trp; Clontech). The substrate X-α-gal was added to the media (-Ade/-His/-Leu/-Trp) for the detection of β-galactosidase activity after 3 d at 30 °C.
To search for the specific motifs that HmoWRKY42 can interact with itself to form homodimers. The fragments of HmoWRKY42 were cloned according to the motif and ligated into pGADT7 (primers are listed in Table S1). The recombinant plasmids pGADT7-HmoWRKY42-1, pGADT7-HmoWRKY42-2, pGADT7-HmoWRKY42-3, and pGADT7-HmoWRKY42-4 were independently transformed into Y2H cells according to the experimental method described above.
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9

Yeast Two-Hybrid Assay Protocol

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Yeast two-hybrid assay was performed according to the user manual for the Yeastmaker Yeast Transformation System (Clontech Laboratories, Mountain View, CA, USA). Combinations containing the fragments fused in pGBKT7 and pGADT7 vectors were co-transformed into the AH109 strain via the PEG/LiAc transformation procedure. At 3 d after transformation, yeast cells were spread on selective media with 3-amino-1,2,4-triazole (3AT) in continuous blue light or darkness for 3 d.
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10

Yeast Two-Hybrid System Transformation

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The PGBKT7-ZjNOL and PGADT7-ZjNYC recombinant plasmids were transformed into yeast strains Y2H and Y187, respectively, using the Yeastmaker™ Yeast Transformation System (Clontech Laboratories, Mountain View, CA, USA). The MATCHMAKER GAL4 yeast two-hybrid system was set up according to the manufacturer’s instructions for the MatchmakerTM Gold Yeast Two-Hybrid System (Clontech Laboratories).
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