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Mmp 9 inhibitor 1

Manufactured by Merck Group
Sourced in Germany, United States

MMP-9 inhibitor I is a laboratory reagent used in research applications. It functions as an inhibitor of the matrix metalloproteinase-9 (MMP-9) enzyme, which plays a role in various biological processes. The core function of this product is to serve as a tool for studying and modulating the activity of MMP-9 in experimental settings.

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17 protocols using mmp 9 inhibitor 1

1

Pharmacological Agents for Neurotransmission

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PTX, glycine, CNQX, and MMP-9 inhibitor I were obtained from Sigma Aldrich (Canada). AP5, GM 6001, UK 356618, and SB 3CT were obtained from Tocris Cookson (Bristol, UK). glycine and AP5 were dissolved in distilled water. CNQX, GM 6001, UK 356618, MMP-9 inhibitor I, and SB 3CT were dissolved in dimethyl sulfoxide. PTX was dissolved in ethanol. All of these drugs were diluted from the stock solutions to the final desired concentration in the ACSF before immediate using. The dimethyl sulfoxide diluted in ACSF had no effect on basal synaptic transmission and plasticity.
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2

Recombinant Histone and MMP-9 Expression

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Core histones and MMP-9 proteins were expressed in Escherichia coli Rosetta 2 (DE3) pLysS cells (Novagen) and purified from inclusion bodies as described recently [20 (link)]. To generate mutant H3 and MMP-9 expression vectors, H3 and MMP-9 cDNAs were mutated by the QuikChange II site-directed mutagenesis kit (Agilent Technologies) before the construction. Further details of plasmid constructions are available upon request. G9a inhibitor BIX01294 is from Santa Cruz Biotech, and EZH1/2 inhibitor UNC1999 and MMP-9 Inhibitor I are from Sigma. Antibodies used in this study are as follows: H2A, H2B, H3, H4, and EZH2 antibodies from Abcam; H3K27me1 and EZH1 antibodies from Millipore; G9a, actin, and FLAG antibodies from Sigma; His antibody from Novagen; and MMP-9 antibody from Santa Cruz Biotech.
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3

Chemically Induced LTP in Rat Cortical Neurons

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High density, DIV-24 rat cortical neurons were accommodated for 30 min in artificial (a) CSF (containing in mM: NaCl 125, KCl 2.5, CaCl2 2, MgCl2 1.25, glucose 11, NaHCO3 26.2, NaH2PO4 1, Hepes 10, and 200 μM APV, pH 7.4). Then, LTP was induced chemically by the application of a chemical cocktail containing 100 μM picrotoxin (Abcam), 1 μM strychnine (Abcam),10 μM glycine (Sigma-Aldrich), in 0 Mg2+, 0 APV artificial cerebrospinal fluid (aCSF) for 30 min. After this, extracellular media proteins were collected and concentrated by the TCA method, and cells were lysed in RIPA buffer. When inhibitors or antagonists were employed, they were added in accommodation to the aCSF phase, as well as during the cLTP phase. The following chemicals were used: APV (200 μM, Abcam,) NBQX (10 μM, Tocris), TAPI-0 (25 μM, Enzo, which inhibits MMP13, MMP9, MMP1, TACE, and MMP3 with decreasing affinities (Ki in nM 0.2, 0.5, 6, 8.8, and 68, respectively)), GM6001 (50 μM, Sigma-Aldrich), and MMP9 inhibitor I (1 μM, Sigma-Aldrich).
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4

Antibody and Inhibitor Reagents for Protease Studies

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A rabbit polyclonal anti-mouse DSP (M-300 # sc-33587) antibody was purchased from Santa Cruz Biotechnology Inc. (Dallas, TX, United States). Anti-MMP9 (AF909) and Anti-MMP2 (AF1488) antibodies were purchased from R&D SYSTEMS (United States). A monoclonal anti-FURIN (ab183495) and a polyclonal anti-MMP9 (ab38898) antibodies were purchased from Abcam Corp. (Cambridge, United Kingdom). A mouse monoclonal anti-MYC-tag (60003-2-Ig), an anti-beta Actin (60008-1-Ig) and a monoclonal anti-GAPDH (60004-1-Ig) antibodies were purchased from Proteintech (United States). MMP9 Inhibitor I (444278) was purchased from EMD Millipore Corp. (Billerica, MA, United States). MMP2 Inhibitor II (444286) was purchased from EMD Chemicals Inc. (San Diego, CA, United States). MMPs broad-spectrum inhibitor used in the study was obtained from Thermo Fisher Scientific. FURIN Inhibitor I (Decanoyl-RVKR-CMK) (34493) was purchased from Merck Millipore (Darmstadt, Germany). IFKineTM Red Donkey Anti-Rabbit IgG (A24421) and IFKineTM Green Donkey Anti-Goat IgG (A24231) were purchased from Abbkine Scientific Co. (California, CA, United States). EnzChekTM Gelatinase/Collagenase Assay Kit (E12055) was purchased from Thermo Fisher Scientific.
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5

Inhibition of MMP-Mediated Sdc4 Shedding

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For the inhibition of MMP related Sdc4 shedding two different inhibitors were used. For MMP-2 inhibition the ARP-100 inhibitor (Santa Cruz, Dallas, USA) was used with a final concentration of 50 mM and the MMP-9 inhibitor I (Merck Millipore, Burlington, USA) was used at a final concentration of 5 mM.
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6

Leukemia Cell Adhesion Assay

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Leukemia cells were labelled with cell trace violet dye (ThermoFisher Scientific) and cultured on ~ 80% confluent meningeal cells. Anti-human CD99 monoclonal antibody clone 0662 (MABF927, EMD Millipore) or isotype control (mouse IgG3, kappa monoclonal; Abcam ab18394) were added at the same time as co-culture. For some experiments, MMP-9 inhibitor I 1 μM (EMD Millipore CAS 1177749-58-4), AP-1 inhibitor T-5224 500 nM (Fisher Scientific) or Batimastat 500 nM (BioVision) were added as well. After 24 h, the supernatant was collected and count beads were used with flow cytometry to determine the number of non-adherent, viable leukemia cells. Labeling of the leukemia cells with cell trace violet facilitated gating out any non-adherent meningeal cells. The ratio of leukemia cells in each condition to cells plated were used to calculate the percentage of non-adherent leukemia cells. For experiments testing the effect of CD99 antibody pre-treatment, Jurkat and human meningeal cells were separately incubated ± CD99 antibody clone 0662 (5 μg/mL) for 24 h, washed to remove excess antibody, combined in a co-culture adhesion assay, and adhesion measured after an additional 4 h.
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7

Inflammatory Mediators and Inhibitors

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Aspirin, celecoxib, and actinomycin d were purchased from Sigma Aldrich. Heparin was obtained from Fuso Pharmaceutical Industries. Ozagrel, 12-HHT, LY255283, and CAY10583 were purchased from Cayman Chemical Company. Methyl cellulose 400 was purchased from Wako Pure Chemical Industries. Recombinant human TNF was obtained from PeproTech. The human TNF-neutralizing antibody Infliximab was purchased from Janssen Biotech. The mouse TNF-neutralizing antibody D2H4 was purchased from Cell Signaling Technology. MMP-9 inhibitor I (an MMP-9–specific reagent) and MMP inhibitor II (a broad MMP inhibitor) were purchased from EMD Millipore.
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8

VSMC Calcification Modulation by MMPs

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VSMC were grown in 12- or 24-well plates to ~90 % confluency (day 0). Calcification was induced by a calcification medium (CM) consisting of standard culture medium supplemented with NaH2PO4 and CaCl2 to final concentrations of PO43− (2.8 vs. 1.0 mmol/l) and Ca2+ (2.7 vs. 1.8 mmol/l), respectively. Cells were treated for up to 9 days as indicated and media were replaced every 2–3 days.
To study their effects on VSMC calcification, the recombinant MMPs-2 and −9 (3 nM; BioTez, Berlin, Germany) and the specific inhibitors for MMP-2 (MMP-2 inhibitor I; 10 μM; Merck Schwalbach, Germany), MMP-9 (MMP-9 inhibitor I; 1 μM; Merck) and both gelatinases (Ro28-2653; 1 μM; Roche Diagnostics GmbH, Penzberg, Germany) were added to CM.
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9

Quantifying Leukocyte-Endothelial Interactions

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Monoclonal mouse anti‐human ICAM‐1 (clone R6.5) was from ATCC (Manassas, VA) and phycoerythrin‐labeled monoclonal mouse anti‐human ICAM‐1 (clone LB‐2) was from Santa Cruz Biotechnology (Dallas, TX). Alexa Fluor 350‐labeled goat anti‐mouse IgG was from Invitrogen (Carlsbad, CA). Nonspecific mouse IgG was from Jackson ImmunoResearch (West Grove, PA). Green Fluoresbrite® polystyrene particles (100 nm in diameter) were from Polysciences (Warrington, PA). Porous transwell inserts (1.0 µm‐pore size) were from Thermo Fisher Scientific (Waltham, MA). Human sICAM‐1 ELISA kits were from Invitrogen (Carlsbad, CA). 125Iodine (125I) and Iodogen pre‐coated tubes were from PerkinElmer (Waltham, MA) and Thermo Fisher Scientific (Waltham, MA), respectively. MMP‐9 Inhibitor I and MMP‐2 Inhibitor I were from EMD Millipore (Billerica, MA). Unless specified, all other reagents were from Sigma‐Aldrich (St. Louis, MO).
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10

ICAM-1 Immunolabeling Protocol

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Monoclonal mouse anti-human ICAM-1 (clone R6.5) was from ATCC (Manassas, VA) and phycoerythrin-labeled monoclonal mouse anti-human ICAM-1 (clone LB-2) was from Santa Cruz Biotechnology (Dallas, TX). Alexa Fluor 350-labeled goat anti-mouse IgG was from Invitrogen (Carlsbad, CA). Non-specific mouse IgG was from Jackson ImmunoResearch (West Grove, PA). Green Fluoresbrite® polystyrene particles (100 nm in diameter) were from Polysciences (Warrington, PA). Porous transwell inserts (1.0 µm-pore size) were from Thermo Fisher Scientific (Waltham, MA). Human sICAM-1 ELISA kits were from Invitrogen (Carlsbad, CA). 125Iodine (125I) and Iodogen pre-coated tubes were from PerkinElmer (Waltham, MA) and Thermo Fisher Scientific (Waltham, MA), respectively. MMP-9 Inhibitor I and MMP-2 Inhibitor I were from EMD Millipore (Billerica, MA). Unless specified, all other reagents were from Sigma-Aldrich (St. Louis, MO).
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