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11 protocols using ortho phthalaldehyde

1

Comprehensive Analytical Standards Protocol

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L-amino acid standards, norvaline, sarcosine, sodium dihydrogen phosphate (NaH2PO4), hydrochloric acid, sodium hydroxide, guanidine hydrochloride, 2,4-dinitrophenylhydrazine, iron (II) chloride, iron (III) chloride, ammonium thiocyanate, ortho-phthalaldehyde, 9-fluorenylmethoxycarbonyl chloride, iodoacetic acid, 3-mercaptopropionic acid, boric acid (H3BO3), trichloroacetic acid, and MS-grade ammonium acetate were from Sigma-Aldrich (Darmstadt, Germany). Standards for fatty acid analysis included Supelco 37 Component FAME mix (Supelco, St. Louis, MO, USA), 68D (Nu-Check-Prep, Elysian, MN, USA), and GLC-490 (Nu-Check-Prep, Elysian, MN, USA). Standards for the lipid class analysis were oleic acid, oleoyl monoacylglycerol, dioleoyl diacylglycerol, triolein, dioleoyl phosphatidylcholine, cholesteryl oleate and ethyl docosahexaenoic acid (Larodan, Solna, Sweden). All solvents used were at least HPLC grade. Water used was ultra-pure water (ELGA LabWater, High Wycombe, UK).
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2

L-Glutamine Detection via HPLC

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Precolumn derivatization method using ortho-phthalaldehyde (OPA with methanol ≥99.9%, potassium borate 1M pH = 9.5, and 2-mercaptoethanol ≥99.0%) 1:5 (Sigma Aldrich) was used to detect L-glutamine by a Gilson UV/vis_155 detector (338nm). Culture supernatants were filtered by Acrodisc 13mm syringe filters with 0.2μm supor membrane (Pall Corporations) previously to analysis. Inorganic mobile phase A, pH = 7.8, was composed by Na2HPO4.2H2O 350 mM:propionic acid 250mM (1:1) mixture (Merck) with acetonitrile HPLC grade in water (10:2:13) and organic mobile phase B was composed by acetonitrile, methanol and water (3:3:4) (HPLC grade, HiPerSolv Chromanorm, VWR Chemicals). Standard solutions were prepared in MilliQ water (Millipore). A Gilson bomb system (Gilson) was used with a 40ºC Hi-Chrom C18 (model HI-5C18-250A) 5μm particles column (HiCrom). All data was analyzed in Gilson Uniprot Software, version 5.11.
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3

Antioxidant and Anti-inflammatory Assays

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All chemicals and solvents used were of analytical grade. Tannic acid (purity 95%) was purchased from ACROS organics (Geel, Belgium, Europe). Bradford reagent was acquired from Bio-Rad (Hercules, CA, USA). Acridine orange, catalase, cerium nitrate hexahydrate (purity 99.999%), dimethyl sulfoxide (DMSO), ethyl diamine, HBSS (Hank’s balanced salt solution), hydrogen peroxide (99.9%), ortho-phthalaldehyde, protease inhibitor cocktail, reduced glutathione (GSH), and the chemical cross-linkers of 1, 1′-carbonyldiimidazole (CDI) were obtained from Sigma-Aldrich (St. Louis, MO, USA). DPPP (diphenyl-1-pyrenylphosphine) and H2DCF-DA (2′,7′-dichlorodihydrofluorescein diacetate) were purchased from Molecular Probes (Eugene, OR, USA). DMEM (Dulbecco’s modified Eagle’s medium) and fetal bovine serum were purchased from Gibco (Carlsbad, CA, USA). Neutral red (3-amino-7-dimethylamino-2-methylphenazine hydrochloride) was obtained from Inlab (São Paulo, Brazil). HRP-conjugated goat anti-rabbit IgG secondary antibody, mouse anti-COX-2, mouse anti-MMP-1, mouse anti-β-actin and ECL reagent were purchased from Santa Cruz Biotechnology (Paso Robles, CA, USA).
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4

Amino Acid Analysis Protocol

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General pro-analysis grade chemicals (hydrochloric acid, sodium acetate, sodium tetraborate, 2-mercaptoethanol) were purchased from Merck Biosciences (Darmstadt, Germany); ortho-phthalaldehyde, methanol and tetrahydrofuran, all HPLC-grade, were supplied by Sigma Aldrich (St. Louis, United States) and Milli Q water was HPLC-grade. The amino acids standards (aspartic acid, asparagine, glutamic acid, glutamine, serine, histidine, glycine, threonine, arginine, alanine, tyrosine, valine, methionine, tryptophan, phenylalanine, isoleucine, leucine and lysine) were supplied by Sigma Aldrich (St. Louis, United States).
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5

Quantification of Methylated Arginine Analogs

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L-arginine (>99%), NG,NG′-dimethyl-L-arginine di(p-hydroxyazobenzene-p′-sulfonate) (SDMA), perchloric acid (PCA), potassium tetraborate, ortho-phthalaldehyde (OPA), and 2-mercaptoethanol (ME) were obtained from Sigma-Aldrich (Steinheim, Germany). NG,NG-dimethyl-L-arginine hydrochloride (ADMA, >98%) was purchased from Cayman Chemical Company (Ann Arbor, MI, USA). Di-potassium hydrogen phosphate, potassium-dihydrogen phosphate, trichloroacetic acid (TCA), perchloric acid (PCA), hydrochloric acid (37%), ammonia (25%), ortho-phosphoric acid (85%), methanol, sodium hydroxide, and acetonitrile were purchased from Merck (Darmstadt, Germany). Oasis MCX mixed-mode SPE columns (30 mg, 1 ml) were kindly supplied by Waters Denmark.
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6

Comparative Analysis of GABA Green and Oolong Tea

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GABA green tea and GABA oolong tea were purchased from an Italian specialist tea shop (La Teiera Eclettica, Milan, Italy). Gallic acid, epigallocatechin-gallate, epicatechin-gallate, theanine, glutamic acid and glutamine were obtained from PhytolabGmbH and Co., KG (Vestenbergsgreuth, Germany). Bovine serum albumin and a kit for protein determination were purchased from ZiestChem Company (Tehran, Iran). In addition, 5,5-dithiobis(2-nitrobenzoic acid), ethylenediaminetetraacetic acid, nitro blue tetrazolium chloride, potassium dihydrogen phosphate, reduced glutathione, sodium dihydrogen phosphate, trichloroacetic acid, thiobarbituric acid, hydrogen peroxide, sodium carbonate, hydroxylamine chloride, ketamine, lidocaine, xylazine, FolinCiocalteau’s reagent, LC/MS-grade methanol and acetonitrile, formic acid solution 1 M, caffeine, epicatechin, catechin, sodium acetate, trimethylamine, tetrahydrofuran, ortho-phthalaldehyde, fluorenylmethylchloroformate were purchased from Sigma-Aldrich Chemical Company (St. Louis, MO, USA). Other chemical reagents and solvents were purchased from Merck Chemical Company, Darmstadt, Germany.
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7

Enzymatic Activity and Antioxidant Evaluation

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Trypsin (EC 3.4.21.4), chymoTrypsin (EC 3.4.21.1), furanacrylolyl tripeptide (FAPGG), ortho-phthalaldehyde (OPA), 2, 2, Diphenyl-1-Picryl hydrazyl (DPPH), 2, 2′–azinobis (3-ethyl-benzothiazoline-6-sulphonate) (ABTS), 6-hydroxy-2, 5, 7, 8-tetramethylchroman-2-carboxylic acid (trolox), trifluoroacetic acid (TFA), acetonitrile were obtained from Sigma–Aldrich Chemie GmbH (Munich, Germany). Ultrafiltration membranes with 3, 5 and 10 kDa cut-off were purchased from Sartorius Stedim (Biotech company, Geottingen, Germany).
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8

Evaluation of Antioxidant Properties

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All solvents and chemicals were of analytical grade. Nutrient Broth (NB), Nutrient Agar (NA), Mueller Hinton Broth (MHB), Mueller Hinton Agar (MHA), McFarland standard were purchased from Oxoid (Basingstone, UK). 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), 2,2′-azobis (2-amidinopropane) dihydrochloride (AAPH), 2,7-dichlorodihydrofluorescein diacetate (DCFH-DA), dinitrophenylhydrazine (DNPH), trichloroacetic acid (TCA), perchloric acid (PCA), thiobarbituric acid (TBA), 1,1,3,3-tetramethoxypropane (TEP), guanidine hydrochloride, ortho-phthalaldehyde (OPA), reduced glutathione (GSH), phosphoric acid, potassium dihydrogen phosphate (KH2PO4), hydrochloric acid (HCl), streptozotocin (STZ), ethanol, ethyl acetate, and methanol from Sigma-Aldrich (St. Louis, MO, USA). All HPLC analytical standards, including protocatechuic acid, syringic acid, rutin, ellagic acid, cynaroside, daidzein, neochlorogenic acid, chlorogenic acid, vitexin, trans p-coumaric acid, trans-sinapic acid, trans ferulic acid, rosmarinic acid, resveratrol, apigenin, myricetin, quercetin, and kaempferol, were bought from Sigma-Aldrich (St. Louis, MO, USA). Phosphate buffer saline (PBS) was bought from VWR (Radnor, PA, USA).
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9

Analyzing Phytochemicals in Specialty Teas

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Tea samples were purchased from an Italian specialist tea shop (La Teiera Eclettica, Milan, Italy). The selected teas differ in the degree of fermentation (green and oolong teas) and in the production process (GABA teas and non-GABA teas) (Table 1). Samples GT5, GT6, and GT7 were submitted to different light exposures: GT6 was unshaded, and GT5 and GT7 were shaded for 10 and 20 days, respectively.
EC, ECG, EGCG, and L-theanine were purchased from PhytoLab GmbH & Co. KG (Vestenbergsgreuth, Germany). GA, (±)-catechin, caffeine, glutamic acid, glutamine, GABA, sodium acetate, triethylamine, tetrahydrofurane, ortho-phthalaldehyde, fluorenylmethylchloroformate, Na2CO3, HPLC-MS-grade methanol, HPLC-grade acetonitrile, and formic acid solution 1 M were obtained from Sigma Aldrich Chemical Company (St. Louis, MO, USA). HPLC-grade water was obtained from an LC-PakTM Millex system (Millipore Coorporation, Billerica, MA). D2O and TSP were purchased from Euriso-top (Saint-Aubin, France). D2O phosphate buffer for NMR samples (400 mM, pH 7.00) was prepared using potassium phosphate monobasic and potassium phosphate dibasic from Sigma Aldrich.
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10

Protein Characterization via Spectroscopic Methods

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Iodoacetamide (IAA), potassium tetrathionate (PTT), thioflavin T (ThT), sodium bicarbonate (sodium hydrogen carbonate), bovine serum albumin (BSA), ortho-phthalaldehyde (OPA), sodium dodecyl sulfate (SDS), cysteine hydrochloride were obtained from Sigma–Aldrich ChemieGmbh (Munich, Germany). Trichloroacetic acid (TCA), phosphate buffer, peptone, β-mercaptoethanol, sodium tetra borate, ethylene diamine tetra acetic acid (EDTA), phosphoric acid and sodium chloride were obtained from Merck (Germany). Purified ficin (ficin A) from Sabz cultivar of Iranian fig latex and camel casein were prepared with same procedure as previously described for bovine casein [24 (link)]. All other chemicals were of analytical grade.
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