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3 protocols using eight well chamber slide

1

Immunostaining of KB-VIN Cells

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Immunostaining of KB-VIN was performed as described previously.43 (link) Briefly, KB-VIN cells were seeded on an eight-well chamber slide (Lab-Tech) for 24 h prior to treatment with compounds. Cells were treated with compound for 24 h. Concentrations of reagents were used based on their IC50 used for cell cycle analysis as follows: 0.3 and 3.0 µM of 1, 20 µM 3, and 0.1% DMSO as a control. Cells were fixed in ice-cold 4% paraformaldehyde in phosphate-buffered saline (PBS) followed by permeabilization with 0.5% Triton X-100 in PBS. Fixed cells were labeled with mouse monoclonal antibody to α-tubulin (B5-1-2, Sigma) and rabbit polyclonal antibody to γ-H2AX (BETHYL Lab.) followed by FITC-conjugated antibody to mouse IgG (Sigma) and Alexa Fluor 546-conjugated antibody to rabbit IgG (Life Technologies). Nuclei were labeled with DAPI (Sigma). Fluorescence-labeled cells were observed using a confocal microscope (Zeiss, LSM700) controlled by ZEN software (Zeiss). Parameters (laser, beam splitter, band-pass filter) for confocal fluorescence imaging were used as follows: track 1 for DAPI (405 nm, 420 nm, 420−1000 nm), track 2 for FITC (488 nm, 544 nm, 490−555 nm), and track 3 for Alexa Fluor 546 (555 nm, 559 nm, 505−600 nm). Confocal images were reconstructed by stacking using ZEN (black edition) software (Zeiss). Final images were prepared by Photoshop CS6 (Adobe).
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2

Localization of SART3 variant proteins in HEK293t cells

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HEK293t cells (ATCC CRL-3216) were maintained in D-MEM supplemented with 10% foetal bovine serum (FBS) and 2 g/L NaHCO3. 5 h prior to transfection the cells were seeded at 80% confluence on to an eight-well chamber slide (Lab-tech). 100 ng of empty vector control, wild type or variant pCMV-SART3-FLAG expression vectors were transfected using Lipofectamine 2000 (0.5 µL/chamber, Invitrogen) with Gibco Opti-MEM - Reduced Serum Medium (Gibco, 31985-070) used to dilute the DNA and the Lipofectamine reagent before complexing. After 24 h cells were washed in phosphate buffered saline (PBS), fixed with 4% paraformaldehyde (PFA), permeabilised and blocked with blocking buffer 5% bovine serum albumin (BSA), 10% donkey serum in 0.1% Triton-X in PBS (PBTX). Cells were incubated overnight with antibodies in 1% BSA, 2% serum and 0.1% PBTX. Cells were washed three times with PBS and incubated in secondary antibodies. DAPI was used for nuclear counterstaining, and secondary antibody only staining was used to control for unspecific binding. Cells were imaged using the Zeiss LSM780 confocal microscope. Two independent experiments yielded the same results. All antibody details are provided in Supplementary Data 4.
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3

Immunofluorescence Microscopy of Tubulin

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KB-VIN cells (2.4 × 104 cells/well) were seeded
in an eight-well chamber slide (Lab-Tech)
for 24 h prior to treatment with compounds. The cells were treated
for 24 h with 2, 3, or DMSO as a control
for 24 h. Fixed (4% paraformaldehyde in PBS) and permeabilized (0.5%
Triton X-100 in PBS) cells were labeled with mouse monoclonal antibody
to α-tubulin (B5-1-2, Sigma), rabbit IgG to serine 10-phosphorylated
histone H3 (p-H3) (#06570, EMD Millipore) followed by FITC-conjugated
antibody to mouse IgG (Sigma) and Alexa Fluor 549-conjugated antibody
to rabbit IgG (Life Technologies).19 (link) Nuclei
were labeled with DAPI (Sigma). Fluorescence labeled cells were observed
using a confocal microscope (Zeiss, LSM700) controlled by ZEN software
(Zeiss). Confocal images of whole cells were superimposed and merged
using ZEN (black edition) software. Final images were prepared using
Adobe Photoshop CS6.
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