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11 protocols using combiflash rf 200i

1

Optimized Purification and Characterization

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Unless stated otherwise, reactions were conducted in oven-dried glassware under an atmosphere of argon using anhydrous solvents (passed through activated alumina columns). All commercially obtained reagents were used as received. Flash column chromatography was performed using reversed phase (100 Å, 20–40 micron particle size, RediSep® Rf Gold® Reversed-phase C18 or C18Aq) on a CombiFlash® Rf 200i (Teledyne Isco, Inc., Lincoln, NE).
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2

Detailed Organic Reaction Protocols

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All reactions were performed under a dry nitrogen atmosphere unless otherwise noted, and reaction temperatures were measured externally. All reagents were used directly as obtained from commercial sources. Anhydrous DMF was purchased from TCI and used as received. Toluene was distilled from sodium benzophenone ketyl radical. Reactions were monitored by thin-layer chromatography (TLC) on pre-coated silica gel (60F254) glass plates (0.25 mm) purchased from Silicycle and visualized using UV light (254 nm), an I2 chamber, and/or ninhydrin stain. Flash chromatography was conducted using a Teledyne ISCO CombiFlash Rf 200i with the listed eluents, unless noted otherwise. 1H and 13C NMR spectra were recorded on a Bruker Avance-500 spectrometer at 500 MHz and 125.4 MHz, respectively. Chemical shifts in CDCl3 and d6-DMSO are expressed in ppm relative to the deuterated solvent signal(s).77 Mass spectra were recorded on an AutoSpec-Ultima_NT mass spectrometer using electron ionization (EI) at 70 eV and an EBE sector mass analyzer. Melting points were determined with a Mel-Temp 1001D capillary melting point apparatus and are uncorrected.
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3

Characterization of Organic Compounds

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Optical rotations were measured on a Rudolph Research Analytical AUTOPOL IV digital polarimeter at 589 nm. UV absorptions were acquired with an Agilent Cary 60 UV-vis spectrophotometer. IR spectra were recorded with an Agilent Cary FTIR 630 spectrometer and PerkinElmer Spectrum Two equipped with a UATR (single reflection diamond) sample introduction system. NMR spectra were recorded on Varian Direct Drive 500 MHz and Varian Inova 500 MHz spectrometers. Chemical shifts are reported with the use of the residual CDCl3 signals (δH 7.27 ppm; δC 77.0 ppm) as internal standards for 1H and 13C NMR spectra, respectively. COSY, HSQC, HMBC, and ROESY experiments corroborated the 1H and 13C NMR assignments. Analytical LC/MS with a Phenomenex Kinetex C18 column (50 × 2.1 mm, 2.6 μm) on an Agilent 6230 LC/TOF-MS with electrospray ionization detection provided the high-resolution masses. Semi-preparative and analytical HPLC separations were performed on a Shimadzu LC-20 AT system equipped with an ultraviolet (UV) detector using a Luna silica column (5 μm, 250 × 10 mm), and a YMC C-18 column (10 μm, 150 × 4 mm). MPLC was performed on a Teledyne Isco CombiFlash Rf 200i equipped with an evaporative light-scattering detector (ELSD) and a multiwavelength UV detector using a RediSep Rf silica 80 g flash column, and silica gel 230–400 mesh was used to load samples.
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4

Analytical Techniques for Nanoparticle Characterization

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1H NMR spectrum were performed on a NEO 400 MHz spectrometer. LC-MS was performed on a Waters Acquity LCMS system equipped with UV-Vis and MS detectors. Flash chromatography was conducted on a Teledyne Isco CombiFlash Rf-200i chromatography system equipped with UV-Vis and evaporative light scattering detectors (ELSD). Particle size and zeta potential were measured by dynamic light scattering (DLS) with a Malvern Zetasizer Nano ZS. Particle morphology was measured by Cryo-TEM. Flow cytometry was performed using a FACSCanto or FACSymphony A3 instrument (BD Biosciences). In vitro luminescence intensity, pKa, encapsulation efficiency and mRNA concentration, and cell viability were quantified using an Infinite M Plex plate reader (Tecan, Morrisville, NC).
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5

Synthesis of Ionizable Lipid C12-200

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The ionizable lipid C12-200 (1,1'-((2-(4-(2-((2-(bis(2-hydroxydodecyl)amino)ethyl)(2-hydroxydodecyl)amino)ethyl)piperazin-1-yl)ethyl)azanediyl)bis(dodecan-2-ol)) was synthesized by adding N1-(2-(4-(2-aminoethyl)piperazin-1-yl)ethyl)ethane-1,2-diamine (1.00 g, 4.64 mmol, 1.0 equiv.), ethanol (10 mL), and 1,2-epoxydodecane (7.10 mL, 32.5 mmol, 7.0 equiv.) to a 50-mL round-bottom flask with a stir bar. The reaction was stirred at 80 °C for 48 h. Afterward, the ethanol was removed in vacuo and then diluted in 15 mL dichloromethane (DCM). The compound was purified using a CombiFlash (Teledyne ISCO, Lincoln, NE) using a 40 g RediSep Gold® silica gel flash column using a gradient mobile phase from 100% DCM to 20% DCM and 80% Ultra solution (75% DCM, 22% methanol, and 3% ammonium hydroxide) over 30 min. The solution was run purified in two runs, using half of the DCM mixture each time. C12-200 was isolated as a yellow-orange oil in 37% yield and characterized by 1H NMR, 13C NMR, and LC-MS (SI Appendix, Figs. S12–S14).
1H NMR and 13C NMR spectra were obtained on a NEO 400 MHz spectrometer using d-chloroform as the solvent. LC-MS was performed on an Agilent LCMS system equipped with UV–Vis and evaporative light scattering detectors (ELSD). Flash chromatography was performed on a Teledyne ISCO CombiFlash Rf-200i chromatography system equipped with UV-Vis and ELSD.
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6

Optimized Microwave-Assisted Organic Synthesis

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All chemical reagents and solvents were obtained from commercial sources and used without further purification. Microwave reactions were performed using an Anton Paar Monowave 300 reactor. Chromatography was performed on a Teledyne ISCO CombiFlash Rf 200i using disposable silica cartridges. Analytical thin layer chromatography (TLC) was performed on Merck silica gel plates and compounds were visualized using UV or CAM stain. NMR spectra were recorded on a Bruker 600 spectrometer. 1H chemical shifts (δ) are reported relative to tetramethyl silane (TMS, 0.00 ppm) as internal standard or relative to residual solvent signals.
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7

Comprehensive Analytical Characterization Protocol

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A Rudolph Research (Hackettstown, NJ, USA) Autopol IV polarimeter was used to measure the optical rotation at 589 nm. IR spectra were measured using an Agilent Technologies (Santa Clara, CA, USA) Cary 630 FTIR. UV spectra were measured using an Agilent Technologies (Santa Clara, CA, USA) Cary 60 UV-Vis spectrophotometer. A Varian Innova 500, Varian Direct Drive 500, or Varian Innova 400 MHz NMR spectrometer (Agilent, Santa Clara, CA, USA) at 298 K was used to record the NMR spectra. The NMR spectra were recorded using as reference the residual non-deuterated shifts from DMSO-d6 (δH 2.50 ppm and δC 39.51 ppm) (Cambridge Isotopes Laboratory, Tewksbury, MA, USA). The high-resolution mass spectra were recorded on an Agilent Technologies (Santa Clara, CA, USA) LC/MS ToF electrospray ionization spectrometer. MPLC was carried as direct injections on a RediSep C18 50 g flash column using a Teledyne Isco (Lincoln, NE, USA) Combiflash Rf200i, equipped with an evaporative light scattering detector. HPLC was performed using a preparative YMC-Pack (Devens, MA, USA) ODS RP column (250 × 20 mm, 10 µm) and analytical C-18 columns (250 × 10 mm, 5 µm) on a LC-20AD Shimadzu (Columbia, MD, USA) system and an SPD-20A UV detector.
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8

Analytical Procedures for Organic Compounds

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All chemical reagents and solvents were obtained from commercial sources (Aldrich, Acros, Fisher) and used without further purification unless otherwise noted. Chromatography was performed on a Teledyne ISCO CombiFlash Rf 200i using disposable silica cartridges (4, 12, and 24 g). Analytical thin layer chromatography (TLC) was performed on aluminum-backed Silicycle silica gel plates (250 μm film thickness, indicator F254). Compounds were visualized using a dual wavelength (254 and 365 nm) UV lamp, and/or staining with CAM (cerium ammonium molybdate) or KMnO4 stains. NMR spectra were recorded on Bruker DRX 300 and DRX 600 spectrometers. 1H and 13C chemical shifts (d) are reported relative to tetramethyl silane (TMS, 0.00/0.00 ppm) as internal standard or to residual solvent (CDCl3: 7.26/77.16 ppm; dmso-d6: 2.50/39.52 ppm). Mass spectra (ESI-MS) were recorded on a Shimadzu LCMS 2010EV (direct injection unless otherwise noted). High resolution mass spectra (HRMS) were recorded on an Orbitrap Velos high resolution mass spectrometer at the Proteomics Facility of Albert Einstein College of Medicine.
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9

Purification and Characterization of Bioactive Compounds

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Combiflash Rf 200i (Teledyne ISCO) fitted with glass column and silica gel 60 RP-18 (40–63 μm) were used for purification of fractions. Shimadzu HPLC, LC 20AD with PDA detector fitted with either an analytical column (Discovery RP Amide C-16 Supelco 5 μm 250 × 4.6 mm) or semi-preparative (Discovery Amide C-16 Supelco 5 μm 250 × 10 mm) were used for analysis and purification of compounds. Column chromatography was carried out with Merck silica gel (100–200 mesh size). Thin layer chromatography (TLC) was done on TLC plates pre-coated with silica gel 60F254 (0.25 mm normal phase Merck). α-Glucosidase (Maltase EC 3.2.1.20) and p-nitro phenyl-α-d-glucopyranoside were purchased from Sisco Research Laboratory (SRL). Streptozotocin was purchased from Sisco Research Laboratories, Mumbai and metformin from Sigma Aldrich USA. 6-NBDG was procured from Invitrogen. NMR spectra were recorded on a Bruker Avance 500 MHz instrument with TMS as internal standard. Chemical shifts are expressed in δ values. Agilent 6520 Accurate mass Q-TOF/LC-MS was used to determine molecular weight. Absorbance was measured by Thermo Scientific Multiskan spectrometer. All other chemicals and reagents were of analytical grade.
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10

Efficient Purification and Characterization

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All chemical reagents and solvents were obtained from commercial sources and used without further purification. Chromatography was performed on a Teledyne ISCO CombiFlash Rf 200i using disposable silica cartridges. Analytical thin layer chromatography (TLC) was performed on Merck silica gel plates and compounds were visualized using UV. NMR spectra were recorded on a Bruker 300 or 600 MHz spectrometers. The Bruker 600 NMR instrument was purchased using funds from NIH award 1S10OD016305. 1H chemical shifts (δ) are reported relative to tetramethylsilane (TMS, 0.00 ppm) as an internal standard or relative to residual solvent signals.
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