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Total rna rapid extraction kit

Manufactured by ZOMANBIO
Sourced in China

The Total RNA Rapid Extraction Kit is a laboratory equipment designed to efficiently extract total RNA from a variety of sample types. It utilizes a rapid and reliable protocol to isolate high-quality RNA suitable for downstream applications such as reverse transcription and gene expression analysis.

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8 protocols using total rna rapid extraction kit

1

Total RNA Extraction and qRT-PCR Analysis

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Total RNA extraction was conducted using Total RNA Rapid Extraction Kit (Zomanbio, Beijing, China), and RNase‐free DNase I (NEB) was used to eliminate any genomic DNA contamination. First‐strand cDNA synthesis was performed using PrimeScriptTM RT reagent Kit with gDNA Eraser (Takara, Dalian, China). qRT‐PCR was conducted using SYBR® Premix Ex Taq™ II (Takara Bio, Inc.), with the following amplification program: one cycle of 30 s at 95 °C, followed by 40 cycles of 5 s at 95 °C and 34 s at 60 °C. A previously reported translation elongation factor gene PpTEF2 was selected as the internal control (Tong et al., 2009). Relative gene expression levels were calculated using the formula 2−∆∆Ct. Three biological replicates were conducted for each sample. Sequences of the primers used for qRT‐PCR are listed in Table S8.
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2

Quantitative Gene Expression Analysis

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Approximately 100-mg fruit samples were ground into powder in liquid nitrogen and then subjected to total RNA extraction using the Total RNA Rapid Extraction Kit (Zomanbio, Beijing 100085, China) according to the manufacturer’s instructions. RNA extracts were treated with DNase I and then converted to cDNA using the PrimeScriptTM RT reagent Kit with gDNA Eraser (Takara, Dalian 116000, China). qRT-PCR was conducted using TB GREEN (Takara Bio, Inc.), following the manufacturer’s instructions on an ABI StepOne Plus real-time PCR system (Applied Biosystems, Foster City, CA, USA). The amplification program was as follows: One cycle of 30 s at 95 °C, followed by 40 cycles of 5 s at 95 °C and 34 s at 60 °C. Translation elongation factor 2 (TEF2) was used as a constitutive control according to the previous report [64 (link)]. All analyses were repeated three times using biological replicates. Primer sequences used for qRT-PCR are listed in Table S1.
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3

Quantitative Real-Time PCR Protocol

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Total RNA was extracted using Total RNA Rapid Extraction Kit (Zomanbio, Beijing, China). Removal of genomic DNA contamination and first strand cDNA synthesis were conducted using PrimeScriptTM RT reagent Kit with gDNA Eraser (Takara, Dalian, China). Quantitative RT-PCR was carried out in a total reaction volume of 20 μL containing 100 ng of template cDNA, 0.4 μM of each primer, 1 × ROX reference dye, and 10 μL of 2 × SYBR premix Ex Taq II (TaKaRa). The qRT-PCR program was as follows: one cycle of 30 s at 95°C, followed by 40 cycles of 5 s at 95°C and 34 s at 60°C. A translation elongation factor gene PpTEF2 was selected as an internal control according to the previous report (Tong et al., 2009 (link)). All analyses were repeated three times using three biological replicates. The primers used for qRT-PCR are listed in Supplementary Table S2.
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4

RNA Extraction and qRT-PCR Analysis

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Total RNA was extracted using Total RNA Rapid Extraction Kit (ZOMANBIO, Beijing, China) following manufacturer’s instructions. First-strand cDNA synthesis was conducted using PrimerScriptTMRT reagent Kit with gDNA Eraser (Takara, Dalian, China). Quantitative RT-PCR was performed in a total reaction volume of 20 μL containing 0.4 μM of each primer, 1 × ROX reference dye, 10 μL of 2 × SYBR premix Ex Taq II (TaKaRa), and 100 ng of template cDNA. The program for qRT-PCR was as follows: one cycle of 30 s at 95 °C, followed by 40 cycles of 5 s at 95 °C and 34 s at 60 °C. All analyses were conducted with three biological replicates. The primers used for quantitative RT-PCR are listed in Table S1.
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5

Quantitative Real-Time PCR Analysis

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Total RNA was extracted using Total RNA Rapid Extraction Kit (Zomanbio, Beijing, China). First strand cDNA was synthesized using PrimeScript@ Reverse Transcriptase (TaKaRa, Dalian, China). qRT-PCR was performed in a total volume of 20 μL reaction containing 100 ng of template cDNA, 0.2 μM of each primer, and 10 μL of 2 [SYBR premix Ex TaqTM (TaKaRa)]. The amplification program was as follows: one cycle of 30 s at 95°C, followed by 40 cycles of 5 s at 95°C, 34 s at 60°C. PpTEF2 (GDR accession no. ppa001368m) was selected as an internal control according to a previous report (Tong et al., 2009 (link)). The standard curve method was conducted to quantify the transcripts. All analyses were repeated three times. The sequences of primers used for real-time PCR analysis are listed in Supplementary Table S2.
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6

Total RNA extraction and RT-qPCR analysis

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Total RNA extraction was conducted using a Total RNA Rapid Extraction Kit (Zomanbio, Beijing, China). First strand cDNA synthesis was performed using the PrimeScript™ RT Reagent Kit with gDNA Eraser (Takara Bio, Inc.). RT–qPCR was conducted using TB Green® Premix Ex Taq™ (Tli RNaseH Plus, Takara Bio, Inc.), with the following program: one cycle of 30 s at 95°C, followed by 40 cycles of 5 s at 95°C and 30 s at 60°C. The previously reported translation elongation factor gene PpTEF2 was used as the internal reference gene (Tong et al., 2009 (link)). Three biological replicates were conducted for each sample. Sequences of the primers used for RT–qPCR are listed in Supplementary Table 1.
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7

Transcriptome Analysis of Fruit Cultivars

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DEG libraries were constructed from fruit samples of each cultivar at four different development stages, S1–S4. Total RNA was extracted using the Total RNA Rapid Extraction Kit (Zomanbio, Beijing, China) according to the manufacturer’s instructions. The purification of poly(A) mRNAs was performed using oligo-dT attached to magnetic beads. The purified mRNAs were fragmented using super sonication and then subjected to first- and second-strand cDNA synthesis using random hexamer primers. The DGE library was prepared using the Illumina gene expression sample preparation kit, and sequenced using the Illumina Hiseq2000 sequencer according to the manufacturer’s instructions.
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8

RT-qPCR Analysis of Gene Expression

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Total RNA was extracted from samples using the Total RNA Rapid Extraction Kit (Zomanbio, Beijing, China) and then reverse transcribed to generate first-strand cDNA using the PrimeScript RT Reagent Kit (TaKaRa, Dalian, China). We used SYBR Premix Ex Taq II (Takara, Dalian, China) for RT-qPCR analyses. Forward and reverse primers were designed for the MdActin internal reference gene. The RT-qPCR primers are listed in Supplemental Table S2. Gene expression levels were analyzed according to the 2 -ΔΔCT method (Livak and Schmittgen 2001) (link), with three replicates per sample. The experiment was repeated three times.
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