The largest database of trusted experimental protocols

Sybr green dye kit

Manufactured by Takara Bio
Sourced in Japan, China

The SYBR Green dye kit is a molecular biology reagent used for the detection and quantification of DNA in various applications, such as real-time PCR (Polymerase Chain Reaction) and gel electrophoresis. The kit contains the SYBR Green I dye, which is a fluorescent intercalating agent that binds to double-stranded DNA, allowing for the monitoring and measurement of DNA amplification during PCR.

Automatically generated - may contain errors

12 protocols using sybr green dye kit

1

Quantitative RT-PCR Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA samples were collected using an RNA extraction kit (RP120; BioTeke) and transformed into cDNA using a PrimeScript RT reagent kit (Takara, Dalian, Liaoning, China). Then, the resulting cDNA samples were amplified with gene-specific primers and a SYBR Green dye kit (Takara, Dalian, Liaoning, China). Primers were designed as follows: Nkx2.5 (forward) 5′-GAGCCTGGTAGGGAAAGAGC-3′, Nkx2.5 (reverse) 5′-GGTGGGTGTGAAATCTGAGG-3′, GATA4 (forward) 5′-GACTACCACCACCACGCTGT-3′, and GATA4 (reverse) 5′-ATTCAGGTTCTTGGGCTTCC-3′.
+ Open protocol
+ Expand
2

Quantification of EZH2 Expression in BALF

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the collected BALF using an RNA extraction kit (BioTeke, Beijing, China) as per the manufacturer’s protocol. The RNA was then reverse-transcribed into a single-stranded cDNA using the AMV Reverse Transcription System (Takara, Dalian, Liaoning, China). Then, cDNA was amplified with SYBR Green dye kit and gene-specific primer (Takara, Shiga, Japan). The data were normalized to β-actin mRNA levels. Relative gene expression was measured by 2−ΔΔCt method. Primer sequence design is as follows:

EZH2 (F): AGTTCGTGCCCTTGTGTGATAGC

EZH2 (R): ACTCTCGGACAGCCAGGTAGC

β-actin (F): GGCCAACCGCGAGAAGATGAC

β-actin (R): GGATAGCACAGCCTGGATAGCAAC.

+ Open protocol
+ Expand
3

Quantitative PCR Analysis of RNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA of cells after 48 h of transfection was extracted with TRIzol reagent (TaKaRa, Dalian, China) and then used for cDNA synthesis using a PrimeScript RT Reagent Kit (TaKaRa). Quantitative real-time PCR was conducted using a SYBR Green Dye Kit (TaKaRa) with gene-specific primers. The primers purchased from TSINGKE Biological Technology (Beijing, China) were as follows: CHC, forward, 5′-GGCGAGTATCAGGCAGCAGTTG-3′, and reverse, 5′-CCCATCTACACAGGCAAAGCAGAC-3′. DNM2, forward, 5′-CGAGGATGGAGCACAAGAGAACAC-3′, and reverse, 5′-GCCACATAGGAGTCCACCAAGTTG-3′. β-actin (forward, 5′-GGAGATTACTGCCCTGGCTCCTA-3′; and reverse, 5′-GACTCATCGTACTCCTGCTTGCTG-3′) was used as the housekeeping gene to normalize mRNA expression. A real-time QuantStudio 3 system (Thermo Fisher Scientific) was used, and the relative gene expression was calculated by the 2–ΔΔCt method.
+ Open protocol
+ Expand
4

Quantitative RT-PCR for hiPSC-Derived Cardiomyocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA preparations were obtained by using TRIzol reagent (TaKaRa, Japan) from hiPSCs and day 30-hiPSC-CMs, as described elsewhere. One microgram of total RNA was reverse transcribed to cDNA using the PrimeScript RT reagent kit (TaKaRa, Japan). Then, the resulting cDNA samples were amplified with gene-specific primers and a SYBR Green dye kit (TaKaRa, Japan). The forward and reverse primers for PCR are shown in Table S2. GAPDH served as an endogenous control. The relative amount of mRNA to endogenous control was calculated using the 2−ΔΔCT method.
+ Open protocol
+ Expand
5

Analyzing Myocardial Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from myocardium cells was extracted with an RNA extraction kit (BioTeke). Single‐stranded cDNA was synthesized from 500 to 1000 ng of RNA using oligo dT‐adaptor primers and an AMV reverse transcriptase kit (Takara) following the manufacturer's instructions. Subsequently, cDNA was amplified with gene‐specific primers and an SYBR Green dye kit (Takara). β‐actin was used as internal reference. The Ct value in 2−ΔΔCt indicated the relative gene expression.
+ Open protocol
+ Expand
6

Quantitative Analysis of Lipin-1 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA from PC12 cells and tissues was extracted using the TRIzol reagent (Invitrogen, Carlsbad, CA, USA), while cDNA was generated using the primeScript RT reagent kit (TaKaRa, Otsu, Japan) in accordance with the manufacturers' instructions. qRT-PCR was performed using the SYBR® Green Dye kit (TaKaRa, Otsu, Japan) and the Bio-Rad CFX96 system. Relative gene expression levels were calculated using the classic 2−ΔΔCt method [14 (link)]. The primer sequences were as follows: Lipin-1 forward TATGACACGGCTTGTTCC, reverse GTGGCTGCCCTGTATTTC; β-actin forward CCTAGACTTCGAGCAAGAGA, reverse GGAAGGAAGGCTGGAAGA (Generay, Shanghai, China).
+ Open protocol
+ Expand
7

Cardiomyocyte Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from cardiomyocytes was extracted with an RNA extraction kit (BioTeke, Beijing, China) following the manufacturer’s protocol. The RNA was reverse-transcribed to single-stranded cDNA using the AMV Reverse Transcription System (Takara, Dalian, Liaoning, China). Then, cDNA was amplified with a SYBR Green dye kit and gene-specific primers (Takara, Shiga, Japan). Data were normalized to β-actin mRNA levels. Relative gene expression was determined by the 2−ΔΔCt method.
+ Open protocol
+ Expand
8

Quantitative gene expression and mtDNA analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA preparations were extracted with TRIzol reagent (TaKaRa, Japan) from the cells and quantified using a NanoDrop (Thermo Fisher Scientific, United States). One microgram of total RNA was reverse transcribed to cDNA using a PrimeScript RT reagent kit (TaKaRa, Japan). Quantitative real-time PCR was performed using amplified cDNA, gene-specific primers, and a SYBR Green dye kit (TaKaRa, Japan) using QuantStudio 3 (Thermo Fisher Scientific, United States). GAPDH was used as the housekeeping gene. The relative gene expression was calculated by the 2–ΔΔCt method. Mitochondrial DNA content was quantified as described previously (Ulmer et al., 2018 (link)). Genomic and mitochondrial DNA was extracted with a genomic DNA extraction kit (BioFlux, China). The relative content of mtDNA was detected by quantitative real-time PCR using mitochondria-encoded NADH dehydrogenase (mt-ND1 or mt-ND2) primers and normalized to β-globin. All primers were purchased from TSINGKE Biological, and the sequences of the primers are listed in Supplementary Table S1.
+ Open protocol
+ Expand
9

Cardiomyocyte qPCR Analysis of MEF2C

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cardiomyocytes were used for qPCR at a density of 2–3×106 cells/well. Total RNA was extracted from myocardial cells using an RNA Extraction kit (BioTeke Corporation), according to the manufacturer's protocol. Total RNA was then reverse transcribed into single-stranded cDNA using an AMV Reverse Transcription system, according to the manufacturer's protocol (Takara Bio, Inc.). cDNA was amplified using a SYBR Green dye kit and gene-specific primers (Takara Bio, Inc.). The primer sequences of MEF2C and β-actin were: MEF2C forward, 5′-CCTTTTCCTTTTCTGGGGACTTGTT-3′ and reverse 5′-TGCCGCTGTGAGCCTCTATTTG-3′; and β-actin forward, 5′-CCTTTATCGGTATGGAGTCTGCG-3′ and reverse, 5′-CTGACATGACGTTGTTGGCA-3′. β-actin was used as a standardized reference, and the 2−ΔΔCq method was used to determine relative gene expression (25 (link)).
+ Open protocol
+ Expand
10

Quantifying mRNA Expression in Rat Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Using TRIzol reagent (Takara, Japan), total RNA was obtained from the rat hypothalamus, pituitary, colon and ovary. One microgram of total RNA was reverse transcribed into cDNA using Superscript II reverse transcription kit (Takara, Japan). Then, cDNA obtained by reverse transcription and gene-specific primers and a SYBR Green dye kit (Takara, Japan) were used for amplification. Table 1 shows the forward and reverse primers used for the polymerase chain reaction. β-actin was used as the endogenous control. The amount of mRNA relative to the endogenous control was calculated by the 2-△△CT method.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!