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Rabbit anti h3k9me1

Manufactured by Abcam

Rabbit anti-H3K9me1 is a primary antibody that specifically recognizes the monomethylation of histone H3 at lysine 9 (H3K9me1). This modification is associated with transcriptional regulation and chromatin structure.

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5 protocols using rabbit anti h3k9me1

1

Western Blot Analysis of Histone Modifications

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HEK293T cells were lysed in 1× lysis buffer on ice for 30 min and centrifuged at 12,000 rpm for 15 min. Cell lysates were separated by electrophoresis on 4 to 20% SDS–polyacrylamide gel electrophoresis gels and then transferred onto nitrocellulose membranes. The membranes were blocked with 5% milk in TBST (Tris-buffered saline, 0.1% Tween® 20) for 1 hour and incubated overnight at 4°C with the corresponding primary antibodies: rabbit anti-FLAG and anti–β-tubulin (Sigma-Aldrich), rabbit anti-H3K9me1 (Abcam), and rabbit anti-H2AK119ub (Cell Signaling Technology). Next, the experiment was followed by incubation with the horseradish peroxidase–labeled Goat Anti-Rabbit immunoglobulin G (Beyotime) for 1 hour at room temperature 20° to 25°C. Quantitation of immunoblots was then performed via densitometric analysis using the ImageJ software.
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2

Immunofluorescence and Chromatin Assays

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The following primary antibodies were used, respectively: mouse anti-EHMT1 antibody (for IF, Abcam, ab41969), rabbit anti-EHMT2 antibody (for IF, Cell Signaling, 3306S), rabbit anti-H3K9me2 (for IF, Millipore, 07-212), rabbit anti-CCNB3 (for IHC, Bioss, bs-7884R), rabbit anti-H3K9me1 (for IF, Abcam, ab9045), mouse anti-HA-tag (for Co-IP, Abclonal, AE008), mouse anti-Myc-Tag (for Co-IP, Abclonal, AE010), rabbit anti-CTCF antibody (for STAR-seq, Active Motif, 61311), mouse anti- H3K9me2 antibody (for CUT&RUN, abcam ab1220), mouse anti-β-actin (for WB, Zhongshan Golden Bridge Biotechnology, TA-09). Accordingly, the following secondary antibodies were used: goat anti-mouse IgG(H+L) Alexa Fluor 488 (Invitrogen; 1:1000); goat anti-rabbit IgG(H+L) Alexa Fluor 488 (Invitrogen; 1:1000); goat anti-mouse IgG(H+L) Alexa Fluor 594 (Invitrogen; 1:1000); goat anti-rabbit IgG(H+L) Alexa Fluor 594 (Invitrogen; 1:1000).
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3

Histone H3K9 Methylation Quantification

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Tissue was homogenized in lysis buffer (RIPA buffer, DTT; Cell Signaling, Danvers, MA, USA). Supernatant containing proteins was collected after 10 min centrifugation (10 000 g at 4°C). Protein concentration was assessed using the Pierce BCA Protein Assay Kit (Thermo Scientific, Rochester, NY, USA). Protein samples were denaturated at 70 °C for 10 min and run on a 4–12% Bis-Tris gel (NuPAGE Novex; Life Technologies, Grand Island, NY, USA), and then transferred to a polyvinylidene fluoride membrane (Millipore). The membrane was blocked with 5% nonfat dry milk and incubated overnight with the primary antibody (rabbit anti-H3K9me1 (1/1000; Abcam) and rabbit anti-H3 (1/1000; Cell Signaling). The membrane was washed with TBST and then incubated with secondary antibody anti-rabbit HRP (1:10 000; Cell Signaling) for 1 h. Detection and densitometric evaluations were performed using the ECL western blotting detection reagent (GE Healthcare, Piscataway, NJ, USA) and ImageJ software (Bethesda, MD, USA).
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4

Histone H3K9 Methylation Quantification

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Tissue was homogenized in lysis buffer (RIPA buffer, DTT; Cell Signaling, Danvers, MA, USA). Supernatant containing proteins was collected after 10 min centrifugation (10 000 g at 4°C). Protein concentration was assessed using the Pierce BCA Protein Assay Kit (Thermo Scientific, Rochester, NY, USA). Protein samples were denaturated at 70 °C for 10 min and run on a 4–12% Bis-Tris gel (NuPAGE Novex; Life Technologies, Grand Island, NY, USA), and then transferred to a polyvinylidene fluoride membrane (Millipore). The membrane was blocked with 5% nonfat dry milk and incubated overnight with the primary antibody (rabbit anti-H3K9me1 (1/1000; Abcam) and rabbit anti-H3 (1/1000; Cell Signaling). The membrane was washed with TBST and then incubated with secondary antibody anti-rabbit HRP (1:10 000; Cell Signaling) for 1 h. Detection and densitometric evaluations were performed using the ECL western blotting detection reagent (GE Healthcare, Piscataway, NJ, USA) and ImageJ software (Bethesda, MD, USA).
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5

Western Blot and ChIP Antibody Characterization

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The antibodies for Western blot analysis used were: mouse anti-α-tubulin (1:10,000; Sigma, clone B512), rat anti-α-synuclein (1:100; clone 15G7), mouse anti-α-synuclein (1:1000; BD, Synuclein-1), rabbit anti-GFP (1:1000; Santa Cruz), rabbit anti-H3 (1:16000; abcam), rabbit anti-H3K4me3 (1:16000; Abcam), rabbit anti-H3K9me1 (1:16000; Abcam), rabbit anti-H3K9me2 (1:4000; CST), rabbit anti-H3K9me3 (1:16000; Abcam), rabbit anti-H3K27me3 (1:8000; Millipore), rabbit anti-H3K9ac (1:8000; Millipore), rabbit anti-H3K14ac (1:8000; EpiGentek), rabbit anti-H4 (1:16000; Abcam), rabbit anti-H4K12Ac (1:16000; Abcam), rabbit anti-HP1α (1:1000; CST), rabbit anti-EHMT2 (1:2000; abcam), rabbit anti-p38 (1:1000; CST), goat anti-REST (1:250; Santa Cruz) and goat anti-SNAP25 (1:1000; Santa Cruz). The HRP-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories (1:10,000). The antibodies for chromatin immunoprecipitation (ChIP) used were: rabbit anti-EHMT2 (10 μg; Millipore), mouse anti-H3K9me2 (4 μg; Abcam), and rabbit anti-REST (10 μg; Millipore).
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