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4 protocols using tbc1d1

1

Immunoblotting Analysis of Cellular Signaling

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AS160 (#07-741), Flag (#F7425), α-tubulin (#T6074), and phospho-TBC1D1 Ser237 (#07-2268) antibodies were purchased from MerckMilliporeSigma. ACC (#3676), phospho-ACC1 Ser79 (#3661), Akt (#4691), phospho-Akt Ser473 (#4060), phospho-Akt Thr308 (#9275) AMPKα (#2532), phospho-AMPKα Thr172 (#2535), phospho-AS160 Thr649 (#8881), ERK1/2 (#4695), phospho-ERK1/2 Thr202/Tyr204 (#4370), GSK3β (#9315), phospho-GSK3β Ser9 (#9322), HSP90 (#4874), p70S6K1 (#2708), phospho-p70S6K1 Thr389 (#9234), Raptor (#2280), phospho-Raptor Ser792 (#2083), TBC1D1 (#4629), ULK1 (#8054), phospho-ULK1 Ser555 (#5869), and vinculin (#13901) antibodies were purchased from Cell Signaling Technology.
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2

AMPK Signaling Pathway Profiling

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Unless otherwise stated all reagents were from Sigma–Aldrich. Primary antibodies against pan-AMPK-α (#2532), AMPK-β1/2 (#4150), pAMPK Thr172 (#2531), AKT (#4685), ACC (#3876), pACC Ser79 (#3661), IRAP (#3808), rabbit FLAG (#2368), Raptor (#2280), pRaptor Ser792 (#2083) and TBC1D1 (#5929) were from Cell Signaling Technology. Other antibodies were pan-14-3-3 (sc-629) and GST (sc-138) from Santa Cruz Biotechnology Inc., GFP (118144600001; Roche), AMPK-γ1 (ab32508; Abcam), pTBC1D1 Ser237 (#07-2268; Merck-Millipore), β-actin (A1978) and mouse FLAG (F1804). Isoform-specific AMPK-α antibodies were described previously [34 (link)]. A769662 (Abcam) and AICAR (Tocris) were used.
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3

Western Blot Analysis of Signaling Proteins

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Tissues were homogenized in a lysis buffer containing phosphatase and protease inhibitors. Homogenates were subjected to 10% SDS-PAGE and immunoblotted. The following primary antibodies were obtained from Cell Signaling Technology: AKT and pS473-AKT (rabbit polyclonal at 1:1000 dilution), AMPK and pT172-AMPKα (rabbit polyclonal at 1:1000 dilution), P38 and pT180/Y182-P38 (rabbit polyclonal at 1:1000 dilution), TBC1D1, pT590-TBC1D1 and pS700-TBC1D1 (rabbit polyclonal at 1:500 dilation). Anti-CgA (hCgA352–372) polyclonal antibody was raised in rabbit by a commercial vendor Sdix Inc. (Newark, DE, USA) and used at a dilution of 1:1000. This antibody detected full-length CgA (75 kDa), proteoglycan form of CgA (90 kDa) and proteolytically processed CgA (49 kDa and 30 kDa). In addition, we also used anti-CgA mouse monoclonal antibody 5A8 (epitope hCgAR47–L57) (Ratti et al. 2000 (link)) at a dilution of 1:1000 that cross-reacts with murine CgA (Colombo et al. 2002 (link)).
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4

AMPK Signaling Pathway Activation

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To measure AMPK signaling, EDL muscle fibers were incubated in an oxygenated Buffer A bath for 5 min. Buffer A was aspirated and replaced with fresh Buffer A containing DMSO (vehicle), PF-739 (10 μM). A subset of muscle fibers treated with vehicle were contracted by electrical pulsation for 30 min. EDL muscle fibers were stored in a tube and immediately snap frozen in liquid nitrogen. For western blotting, EDL muscle fibers were homogenized in RIPA buffer (50 mM Tris-HCl, pH 8.0, 150 mM NaCl, 1% IGEPAL, 0.5% w/v sodium deoxycholate and 0.1% w/v sodium dodecyl sulfate) with 1 mM phenylmethylsulfonyl fluoride (Thermo Fisher Scientific), protease inhibitor cocktail (Sigma) and Halt’s phosphatase inhibitor (Thermo Fisher Scientific). Protein samples were subjected to SDS-PAGE using a 4–15% gradient gel (Bio-Rad), and transferred to a nitrocellulose membrane. Membranes were incubated overnight with primary antibodies against phospho-AMPK (Thr172) (Cell Signaling, Cat# 2535S), phospho-ACC (Ser79) (Millipore, Cat#07–303), phospho-TBC1D1 (Millipore Cat#07–2268), pan-AMPKα (Cell Signaling, Cat #5831S), ACC (Cell Signaling, Cat#3662S), TBC1D1 (Cell Signaling, Cat#4629S), and α-tubulin (Cell Signaling, Cat#2125S), followed by HRP-conjugated secondary antibodies and chemiluminescent detection.
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