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16 protocols using hek293t

1

Stable Expression of Fluorescent Proteins in Cell Lines

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Stable expression of mCherry protein in HTR8/SVneo cells and GFP protein in HUVECs was induced via lentiviral transduction. The lentiviral particles were generated in HEK293T (Cat#: CRL-3216, ATCC) Gaithersburg, MD, USA) cells with a second-generation packaging system and pLVX-mCherry-C1 vector (Takara Bio, California, USA). In brief, HEK293T cells were seeded into a 100 mm cell culture dish, and the plasmids of psPAX2 (3 μg), PMD2G (3 μg) and pLVX-mCherry or -eGFP (2 μg) were transfected into HEK293T cells using Fugene 6 (Cat#: E2692, Promega, Madison, WI, USA) in a 500 μl transduction volume at 60 % confluency. After overnight incubation, the transfection medium was replaced with fresh growth medium (DMEM/F12 supplemented with 10 % FBS and 10 mM HEPES) and cells cultured for 72 h. Thereafter, the supernatant was collected, and viral particles concentrated with Lenti-X concentrator (Cat#: 631231, Takara, Mountain View, CA, USA). HTR8/SVneo cells and HUVEC cells were then transduced with the mCherry- and eGFP- viral particles, respectively and placed in growth medium supplemented with puromycin (1 μg/ml, Cat#: P9620, Sigma, St. Louis, MO, USA). After 7 days of selection, cells with stable expression of mCherry and eGFP were harvested and frozen until further use.
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2

Isolation and Culture of Primary Mouse Proximal Tubular Cells

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HEK293T and HK2 cells were purchased from ATCC. Mouse anti-Prominin-1 MicroBeads (130-092-333, Miltenyi Biotec) were used to isolate PTCs from Cre-ERT2 +/− APE2 LSL/+ mice, Cre-ERT2 +/− mice, C57B6 mice, and APE2−/− mice. The primary PTCs were cultured in Dulbecco’s Modified Eagle Medium/Nutrient Mixture F-12 (DMEM/F12) containing 10% fetal bovine serum, 100 U/mL penicillin, and 100 μg/mL streptomycin. HEK293T and HK2 cells were routinely genotyped using the Human Cell Line Genotyping System (Promega) and were used within their 6 times passage. Mouse PTCs were genotyped using the primer for transgenic mice and were used within their 3 times passage. All cell lines were used mycoplasma tested negative.
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3

Cell Lines and Transfection Protocols

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Human embryonic kidney cells (HEK293T) were obtained from Riken Cell Bank (Ibaraki, Japan). Human cancer cell lines U373MG (astrocytoma), H1299 (non‐small‐cell lung cancer), HCT116 (colorectal adenocarcinoma), and HBL100 (breast carcinoma) cells were purchased from ATCC (Rockville, MD, USA). Human mammary epithelial cells MCF10A p53+/+ or MCF10A p53−/− were purchased from Sigma Aldrich (St. Louis, MO, USA). HBC4 (breast carcinoma) cells were gifted from Dr. T. Yamori (Japanese Foundation for Cancer Research, Tokyo, Japan). HCT116 p53+/+ and HCT116 p53−/− cell lines were gifts from Dr. B. Vogelstein (Johns Hopkins University, Baltimore, MD, USA). HEK293T and U373MG cells were transfected with plasmids using Fugene6 (Promega, Madison, WI, USA), and Lipofectamin LTX (Invitrogen, Carlsbad, CA, USA), respectively. Small interfering RNA oligonucleotides, commercially synthesized by Sigma Genosys (Woollands, TX, USA), were transfected with Lipofectamine RNAiMAX reagent (Invitrogen). Sequences of siRNA oligonucleotides are shown in Table S1.
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4

Transfection and Expression of TMEM16 Proteins

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TMEM16A (Genbank NM_178642), TMEM16F (NM_175344) and TMEM16K (NM_018075) inserted into the pcDNA3.1 vector were used in this study. Human embryonic kidney 293T cells (HEK-293T, ATCC collection: ATCC CRL 1573) were grown in DMEM-F12 medium (D8437, Sigma) supplemented with 10% fetal calf serum and 0.05 mg/100 ml gentamicin. HEK-293T cells were transfected with 0.6 μg of TMEM16A, TMEM16F or TMEM16K and 0.2 μg of CD8 construct using Fugene HD (Promega, UK) according to the manufacturer’s instructions. Cells were used ~12–24 h after transfection. Transfected cells were visualised using the anti-CD8 antibody-coated beads method48 (link). Mock-transfected cells refer to cells treated with transfection reagent only. COS-7 (ATCC collection CRL-1651) and U2OS (U2OS FlpIn/T-Rex cells were a kind gift of M. Gyrd-Hansen, Ludwig Institute, Oxford49 (link),50 (link)) cells used for immunostaining were maintained in DMEM high glucose media (D6546, Sigma) supplemented with 10% fetal calf serum and 0.05 mg/100 ml gentamicin and grown at 37 ˚C in 5% CO2. For each cell line, solutions were changed every 3–4 days and cells were split to 1/10 when they reached 70–80% confluence.
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5

Cell Lines and Transfection Methodology

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The human embryonic kidney cell line HEK293T was obtained from Riken Cell Bank. The human cancer cell lines U373 MG (astrocytoma), H1299 (non-small cell lung cancer), and HCT116 (colorectal adenocarcinoma) were purchased from American Type Culture Collection. Human mammary epithelial cells MCF10A p53+/+ or MCF10A p53−/− were purchased from Sigma Aldrich (St. Louis, MO, USA). HCT116 p53+/+ and HCT116 p53−/− cell lines were generously provided by B. Vogelstein (Johns Hopkins University, Baltimore, MD, USA). HEK293T and U373 MG cells were transfected with plasmids by using Fugene6 (Promega, Madison, WI, USA) and Lipofectamine LTX (Invitrogen, Carlsbad, CA, USA), respectively. Small interfering RNA (siRNA) oligonucleotides, which were commercially synthesized by Sigma Genosys, were transfected with Lipofectamine RNAiMAX reagent (Invitrogen). Sequences of the siRNA oligonucleotides used are shown in Supplementary Table 2.
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6

Identifying miR-1174 Targets in Ae. aegypti

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We downloaded the 3′-untranslated regions (3’-UTRs) of Ae. aegypti from VectorBase (https://vectorbase.org/vectorbase/app) and predicted the candidate targets of miR-1174 using RNAhybrid [24 (link)], miRanda [25 (link)], TargetScan [26 (link)] and Target Accessibility (PITA) [27 (link)]. The predicted candidate targets were crossed with the upregulated proteins, yielding the final candidate targets. The 3′-UTRs of these candidate target genes were amplified by rapid amplification of cDNA ends (3′-RACEs), and cloned into the psiCHECK™-2 vector after digestion with the restriction enzymes Not I and Xho I. The miR-1174 mimic used for cell transfection was purchased from Thermo Fisher Dharmacon (Thermo Fisher Scientific). The three candidate target genes were finally verified by dual-luciferase reporter assay on GloMax®-Multi Detection System (Promega, Madison, WI, USA), as described in our previous work [28 (link)]. The cell line HEK-293T, vector psiCHECK™-2, and reagents for the dual-luciferase reporter assay (Dual-Glo® Luciferase Assay Reagent and Dual-Glo® Stop & Glo® Reagent) were purchased from Promega.
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7

Lentiviral Transduction of NIH3T3 and 1G4AB TCR

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Into pLVX Lentviral vector (Clontech), genes were subcloned to overexpress MHCI, hβ2M and NYESO peptide in NIH3T3 cells or 1G4AB TCR, hCD8αβ and MfCD8αβ. Lentiviral particles were produced in HEK293T (ATCC, Cat# CRL-3216) using Lenti-X HTX Packaging System (Clontech). Briefly, HEK293T cells were transfected with lentiviral and packaging vectors using Fugene (Promega, Cat# E2692). After 24h of transfection, medium was replaced and supernatants were collected 48 and 72h after transfection, filtered and used for transduction on target cells or stored at −80 °C.
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8

Cell Culture Protocols for Common Cell Lines

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Cell lines were typically cultured in T 75 flasks and checked monthly for mycoplasma contamination using a PCR-based detection kit (Applied Biological Materials). Cells were kept at low passage numbers (< 30) in humidified incubators at 37°C and 5% CO 2 . Cell lines were obtained from ATCC (HEK-293T, CRL-3216; MV-4-11, CL-9591; LNCaP, CRL-1740; KG-1, CCL-246; Kasumi-1, CRL-2724; THP-1, TIB-202), DSMZ (Nomo-1, ACC 542; Molm-13, ACC 554; NB-4, ACC 207), Promega (HiBiT-BRD4-HEK293, CS3023269), and System Biosciences (HEK293-Cas9, CAS630A-1). Cell lines were authenticated prior to receipt and no additional authentication was performed. The following media were used: RPMI-1640 + 10% FBS (KG-1, LNCaP, THP-1); RPMI-1640 + 10% heat-inactivated FBS (Nomo-1, Molm-13, NB-4); RPMI-1640 + 20% FBS (Kasumi-1); IMDM + 10% FBS (MV-4-11); DMEM + 10% FBS (HEK-293T, HEK293-Cas9, HiBiT-BRD4-HEK293). All media contained 1% penicillin/streptomycin (Thermo Fisher, 15140122).
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9

Transient Expression of SCN1A Variants in HEK293T Cells

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Human kidney cells, HEK293T (Sigma-Aldrich, Burlington, MA, USA), were cultured as described previously [38 (link)] in DMEM supplemented with heat-inactivated fetal calf serum (10%), l-glutamine (2 mM), penicillin (100 units/mL) and streptomycin (100 μg/mL). Cell culture reagents were from Gibco (Waltham, MA, USA). One day before transfection, cells were seeded into silicon culture inserts (Culture-Inserts 2 Well form ibidi) on glass coverslips. Plasmids encoding cDNA SCN1A WT (NM_006920; OriGene RG220167) and its derivative, p.Arg1596Cys (AB093548.1; acc. NM_006920 c.5781C>T, p.Arg1585Cys), were transiently expressed in HEK293T cells using the FuGENE6 Transfection Reagent (Promega, Madison, WI, USA). Experiments were performed 48 h after transfection. A total of 2 μg of plasmid DNA for 8 μL FuGENE6 was used for 0.88 cm2 of growth area.
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10

Generating Luciferase-Expressing Hematological Cancer Cells

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Ba/F3 cells were obtained from Kira Gritsman (Dana Farber Cancer Institute and Brigham and Women’s Hospital, Boston, MA, USA) and maintained in RPMI with 10% fetal bovine serum (FBS) and IL3 (10 ng ml−1) (Peprotech, Rocky Hill, NJ, USA). Hematological cancer cell lines were obtained from Thomas Look (Dana Farber Cancer Institute, Boston, MA, USA) and cultured in RPMI (Life Technologies, Waltham, MA, USA) supplemented with 10% FBS (Life Technologies) and 1% Pen/Strep (Life Technologies). For luciferase-expressing PF382 cells, 8 μg pLENTI-Luciferase-Blasticidin vector (gift from H Chang, Dana Farber Cancer Institute, Boston, MA, USA), 2 μg of the packaging plasmid VSVG and 1 μg of D-8-9 helper plasmid were cotransfected into HEK293T packaging cells with 20 μl Fugene 6 (Promega, Madison, WI, USA). After 72 h, the culture supernatants containing lentivirus were collected and filtered (0.45 μm). Cells were transduced twice with lentivirus at 37 °C overnight. Two days after transduction, cells were selected in 35 μg ml−1 blasticidin for 10 days. Polyclonal cells were analyzed and confirmed for luciferase expression using the Promega Luciferase assay system, and then expanded for transplantation.
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