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Quantstudio systems

Manufactured by Thermo Fisher Scientific
Sourced in United States

The QuantStudio™ systems are a series of real-time PCR instruments designed for accurate and reproducible quantitative and qualitative nucleic acid analysis. These systems offer a range of block formats and software options to meet various experimental needs.

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2 protocols using quantstudio systems

1

Comprehensive RNA Extraction and qPCR Analysis

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Total RNA was extracted using TRIzol reagent (catalog number: 15596026, Invitrogen, Thermo Fisher Scientific, Carlsbad, CA, USA) and cDNA synthesis was performed using 1 ug RNA and High-Capacity RNA-to-cDNA kit (catalog number: 4388950, Applied Biosystems™, Thermo Fisher Scientific, Carlsbad, CA), according to the manufacturer’s instructions. Real-time PCR was performed using PowerUp™ SYBR™ Green Master Mix (catalog number: A25743, Applied Biosystems ™, Thermo Fisher Scientific, Carlsbad, CA, USA) on QuantStudio™ systems with respective software (Applied Biosystems™, Thermo Fisher Scientific, Carlsbad, CA, USA). Gene expression was normalized with CypA, Rps9, Gak, and Srp72 as housekeeping genes by using geNorm application [41 (link)]. Primer sequences are described in Table S1.
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2

CHIKV RNA Detection by RT-qPCR

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Reverse transcription quantitative real-time PCR (RT-qPCR) was performed on samples using the GoTaq® Probe 1-Step RT-qPCR System (PROMEGA) on an ABI7500 Real Time PCR Systems or a QuantStudio® Systems (Applied Biosystems). The CHIKV non-structural protein 1 (nsp1) was targeted using the primers CHIKV-F (5’ to 3’: AAAGGGCAAACTCAGCTTCAC), CHIKV-R (5’ to 3’: GCCCTGGGCTCATCGTTATTC) and the CHIKV Probe (5’ to 3’: FAM-CGCTGTGATACAGTGGTTTCGTGTG), based on an assay previously described [11 (link)]. Thermocycler conditions consisted of reverse transcription at 45°C for 15 mins followed by RT inactivation at 95° C for 2 mins, 40 cycles of denaturation at 95°C for 15 sec and annealing at 60° C for 1min.
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