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Stepone plus real time rcr system

Manufactured by Thermo Fisher Scientific

The StepOne Plus real-time PCR system is a compact and reliable instrument designed for real-time PCR analysis. It features a thermal cycler and an optical detection system for the quantitative analysis of DNA and RNA samples.

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2 protocols using stepone plus real time rcr system

1

Quantitative RT-PCR Analysis of Npas4 in Mouse Hippocampus

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RNA from frozen hippocampus was extracted using QIAGEN RNA kit (QIAGEN, Hilden, Germany), and cDNA was synthesized from 1 μg total RNA using a high-capacity cDNA reverse transcription kit (Applied Biosystems, Foster city, CA, USA). The amplification reactions were performed with 12.5 μL 2 × SYBR Green PCR master mix (Applied Biosystems), 1 μg cDNA, and forward and reverse primers (100 μM each) using StepOne Plus real-time RCR system (Applied Biosystems). The cycling parameters were as follows: 50 °C for 2 min and 95 °C for 10 min; 1 cycle of 95 °C for 15 s and 40 cycles of 60 °C for 2 min, after one initial step at 95 °C for 30 s and 55 °C for 30 s finally. The primers used were as follows: mouse Npas4, forward 5′-AGCATTCCAGGCTCATCTGAA-3′ and reverse 5′-GGCGAAGTAAGTCTTGGTAGGATT-3′; mouse GAPDH, forward 5′-TGTCAAGCTCATTTCCTGGTATGA-3′ and reverse 5′-TCTTACTCCTTGGAGGCCATGTAG-3′.
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2

Gene Expression Analysis of Osteoclast Markers

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Total RNA was extracted and qRT-PCR was performed using a StepOne Plus real-time RCR system (Applied Biosystems) as previously described [13] . The following primers were used in the analysis; β-actin (Mm00607939_s1), TRAP (Mm00475698_m1), cathepsin K (Mm00484039_m1), MMP-9 (Mm00442991_m1), NFATc1 (Mm00479445_m1), and c-fos (Mm00487425_m1). Taqman probes (dual-labeled with 6-carboxyfluorescein as the 5'-reporter and 3' TAMRA quencher) were used for assays. The relative quantity of target mRNA (TRAP, cathepsin K, MMP-9, NFATc1 and c-fos) was determined using the comparative C T method by normalizing to the value of the housekeeping gene β-actin. All reactions were run in triplicate.
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