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10 protocols using rpmi 1640 medium

1

Modulation of Gastric Cancer Cell Lines

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Human gastric normal epithelium cell line (GES-1) and GC cells (BGC-823, SGC-7901, and MGC-803) were purchased from Shanghai Institutes for Biological Science, China. BGC-823, SGC-7901 and MGC-803 cells were cultured in RPMI 1640 medium (KeyGene, Nanjing, China). GES-1 cells were cultured in DMEM medium (KeyGene, Nanjing, China) supplemented with 1% penicillin/streptomycin, l-glutamine, and 10% fetal bovine serum (FBS, Invitrogen, Carlsbad, CA, USA). Culture plates were incubated at 37°C in a humidified atmosphere with 5% CO2.
The siRNA specifically targeting RP11-138J23.1, HuR and VAV3 was designed and synthesized by Invitrogen (Invitrogen, USA). The nucleotide sequences of all siRNAs were shown in Supplementary Table S1. The cells were transfected with siRNA using RNAiMAX (Invitrogen, USA). In addition, RP11-138J23.1 overexpression plasmid and vectors containing shRNA targeting RP11-138J23.1 was constructed and transfected with XtremeGENE HP DNA transfection reagent (Roche, Basel, Switzerland).
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Cell Culture Protocols for Lung Cancer Lines

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All cell lines (A549, NCI-H1975, NCI-H358, NCI-H1299, SPC-A1, and human bronchial epithelial cell (HBE)) were purchased from Shanghai Institutes for Biological Science, China. NCI-H1975, A549 and NCI-H1299 cells were cultured in RPMI 1640 medium (KeyGene, Nanjing, China), NCI-H358, SPC-A1, and HBE cells were cultured in DMEM medium (KeyGene, Nanjing, China), supplemented with 10 % fetal bovine serum with 100U/ml penicillin and 100 mg/ml streptomycin included. All cell lines were grown in humidified air at 37 °C with 5 % CO2.
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3

Lung Cancer Cell Line Characterization

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All cell lines (A549, H1299, H1650, SPC‐A1, H1975, H358, PC9, and human bronchial epithelial cell [HBE]) were purchased from Shanghai Institutes for Biological Science (Shanghai, China). A549, H1650, SPC‐A1, H1975, H358, and HBE were cultured in DMEM medium (KeyGene, Nanjing, China); H1299 and PC9 were cultured in RPMI1640 medium (KeyGene), supplemented with 10% FBS with 100 μg/mL penicillin and 100 mg/mL streptomycin included. All cell lines were grown in humidified air at 37°C with 5% CO2. Cell cultures were occasionally tested for mycoplasma (last tested December 2018). Authentication of cells was verified by short tandem repeat DNA profiling within 6 months, and cells used in experiments were within 10 passages from thawing. Cell proliferation was examined using a CCK‐8 Kit (Roche Applied Science). Colony formation assays were performed to monitor LUAD cell cloning capability. Flow cytometer (FACScan, BD Biosciences) equipped with CellQuest software (BD Biosciences) was used to detect apoptosis level.
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Cell Line Culturing and Transfection

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All cell lines (A549, H1299, H1975, PC9, H358, SPC-A1, and HBE1) were obtained from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China). A549, H1299, H1975, PC9, H358 cells were cultured in RPMI 1640 medium (KeyGene, Nanjing, China), SPC-A1 and HBE1 cells were cultured in DMEM medium (KeyGene, Nanjing, China), with 100 units/mL penicillin and 100 units/mL streptomycin and 10% FBS (Thermo Fisher Scientific, MA, USA) at 37 °C in an incubator with 5% CO2. Authentication of cells were verified by STR profiling and mycoplasma contamination of cells were tested using MycoBlueTM mycoplasma detector (Vazyme, Nanjing, China). Transfections were performed using the Lipofectin reagent (Thermo Fisher Scientific) when cells were seeded at 50–80% confluence, according to the manufacturer’s protocol. For siRNA infection, cells were prepared to 30–50% confluence. Forty-eight hours after transfection, the cells were rinsed twice with phosphate-buffered saline and harvested for next experiments. CHX and MG132 were purchased from MedChem Express (NJ, USA).
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Cultivation of Diverse LUAD Cell Lines

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LUAD cell lines (NCIH1975, NCIH1650, PC9, A549, NCIH1299) and human bronchial epithelial cell (HBE) were purchased from Shanghai Institutes for Biological Science, China. NCIH1975, NCIH1650 and HBE cells were cultured in DMEM medium (KeyGene), and PC9, A549 and NCI-H1299 cells were cultured in RPMI 1640 medium (KeyGene), supplemented with 10% fetal bovine serum. All cells were cultured at 37 °C in a humidified incubator containing 5% CO2.
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6

Modulation of GAS5 and miR-21 in Melanoma

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Human UM cell lines MUM-2B and C918 were purchased from Chinese Academy of Sciences Cell Bank (Shanghai, China) and cultured in RPMI 1640 medium (KeyGene, Nanjing, China) with 10% fetal bovine serum (FBS; HyClone, Logan, UT, USA) and 50 µg/mL penicillin/streptomycin in humidified air at 37°C with 5% CO2. Human melanocytes (D78) obtained from Chinese Academy of Sciences Cell Bank were culture in Dulbecco’s modified Eagle’s medium (DMEM; KeyGene).
The GAS5 sequence was synthesized according to the full-length GAS5 sequence and then sub-cloned into a pcDNA3.1 vector (Invitrogen, Shanghai, China). GAS5 siRNAs negative control siRNA (si-NC) were specifically synthesized by Shanghai GenePharma Co, Ltd. (Shanghai, China). The sequences of the GAS5 siRNAs were as follows: si-GAS5 (#1), AGTGTGGCTCTGGATAGCACCTTAT; si-GAS5 (#2), AGGAAGGATGAGAATAGCTACTGAA; si-GAS5 (#3), CAGTGTGGCTCTGGATAGCACCTTA. miR-21 mimics and mimics negative control were purchased from Genecopoeia (Guangzhou, China). Cells at 70~80% confluence were selected for transfection using Lipofectamine 2000 reagent (Invitrogen). Forty-eight hours after transfection, the cells were collected for further analysis.
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7

Gastric Cancer Cell Line Culture

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Five GC cell lines (AGS, HGC-27, BGC-823, MGC-803, and SGC-7901) and normal human gastric mucosa cells GES-1, purchased from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China), were culture in RPMI 1640 medium (KeyGene, Nanjing, China) containing 10% foetal bovine serum (FBS; Invitrogen, Carlsbad, CA, USA) in a 37°C humidified atmosphere of 5% CO2.
Human miR-186 mimics, miR-186 inhibitor, and mimics/inhibitor control were purchased from GenePharma (Shanghai, China), and their sequences were listed in Table II. Knockdown of OIP5-AS1 in cells was obtained by transfection with shRNAs. Chemically synthesised siRNA sequence targeting OIP5-AS1 and the control sequence were inserted into to the shRNA expression vector pGPH1/Neo (GenePharma). The sequences of sh-OIP5-AS1 were sense: 5’-CACCGCTCCTAGGATTCCAGTTATCCGAAGATAACTGGAATCCTAGGAGC-3’; antisense: 5’-AAAAGCTCCTAGGATTCCAGTTATCTTCGGATAACTGGAATCCTAGGAGC-3’. Cell transfection was performed using Lipofectamine 3000 (Invitrogen) following the manufacturer’s protocol.
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8

Transfection Optimization for LUAD Cell Line

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The human LUAD cell line H1975 was purchased from Shanghai Institute of Life Sciences (Shanghai, China). The cells were cultured in RPMI 1640 medium (KeyGene, Nanjing, China), containing 10% fetal bovine serum (FBS) and penicillin/streptomycin (KeyGene, Nanjing, China) in a humidified environment with 5% CO2 at 37 °C. Cells were seeded in 6-well plates before transfection. When the fusion rate reaches 60%-70%, use Lipofectamine 3000 reagent (Invitrogen, California, USA) to transfect MiRNA mimic (10nM, 50nM) and negative control into the cells. The miRNA mimics and mimic negative control were purchased from RiboBio (Guangzhou, China). Transfection efficiency was assessed by quantitative real-time RT-PCR.
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9

Cultivation of LUAD Cell Lines

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The LUAD cell lines (A549, PC9, NCI‐H1299, SPC‐A1, and NCI‐H1975), DDP‐resistant A549 (A549/DDP), and human bronchial epithelial (HBE) cells were purchased from Shanghai Institutes for Biological Science (Shanghai, China). DMEM or RPMI‐1640 medium (KeyGene, Nanjing, Jiangsu, China), which was supplemented with 10% fetal bovine serum (FBS, Gibco, Carlsbad, CA, USA), was used to culture cells. All cells were grown in an incubator at 37°C in 5% CO2. We routinely detected of mycoplasma contamination. All cell lines were authenticated.
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10

NMIBC Cell Line Culturing Protocol

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The NMIBC cell lines BIU-87 and KK47, were cultured in RPMI-1640 medium (Key Gene Biotech, Nanjing, CN) with 10% foetal bovine serum (Biological Industries, Kibbutz Beit-Haemek, ISRAEL), supplemented with and 1% streptomycin sulfate and penicillin sodium at 37 °C and 5% CO2. These two cell lines were purchased from the National Infrastructure of Cell Line Resource (Chinese Academy of Medical Sciences).
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