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3 protocols using bdnf n 20

1

Antibodies for Cytoskeleton and Peroxisome Proteins

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Mouse monoclonal antibodies to α-tubulin and nestin (Rat-401) were purchased from BD Biosciences (San Jose, CA) and Invitrogen (Carlsbad, CA), respectively. Mouse monoclonal antibody to 2′,3′-cyclic-nucleotide 3′-phosphodiesterase (CNPase) was from Sigma (St Louis, MO). Rabbit antibodies to BDNF (N-20) and TrkB (H-181) were from Santa Cruz Biotechnology (Texas, CA). We used rabbit antisera to PTS1 peptide (Otera et al., 1998 (link)), rat catalase (Tsukamoto et al., 1990 (link)), mouse alkyldihydroxyacetonephosphate synthase (ADAPS) (Honsho et al., 2008 (link)), C-terminal region of rat Pex2 (amino acid residues 226–305) (Harano et al., 1999 (link)), 3-ketoacyl-CoA thiolase (Tsukamoto et al., 1990 (link)), acyl-CoA oxidase (AOx) (Tsukamoto et al., 1990 (link)), and sterol carrier protein x (SCPx) (Otera et al., 2001 (link)). Guinea pig anti-Pex14 antiserum (Itoh and Fujiki, 2006 (link)) was also used.
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2

Western Blot Antibody Validation

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Antibodies against phosphorylated-cAMP response element binding (CREB) protein (p-CREB; Ser133), and CREB (48H2) were obtained from Cell Signaling Technology, Inc. (Beverly, MA, USA); against p-extracellular signal-regulated kinases (ERK) 1/2 (Thr202/Tyr204), ERK1/2 (MK1) and BDNF (N-20) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). A monoclonal anti-β-actin antibody, methylthiazolyldiphenyl-tetrazolium bromide (MTT) and melatonin were provided by Sigma-Aldrich (St. Louis, MO, USA).
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3

Retinal Protein Extraction and Western Blot

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Retinas were excised from the eye cup immediately after death, and tissue was snap-frozen on dry ice before lysing using a Lysis-M reagent containing cOmplete Mini Protease Inhibitor (Roche) and phosphatase inhibitors (Thermo Fisher Scientific). Following 20-min homogenization, tissue was centrifuged at 13,000 rpm for 10 min to isolate the soluble cell extract. Protein concentration was determined using a bicinchoninic acid protein assay (Thermo Fisher Scientific), and equal quantities of protein were loaded onto 10% or 4 to 12% bis-tris gels (NuPAGE Novex, Thermo Fisher Scientific). Membranes were blocked in 5% dried skimmed milk in PBS with 0.2% Tween 20 (Sigma-Aldrich) for 60 min and then incubated overnight at 4°C in primary antibody (BDNF N-20, rabbit, 1:200, sc-546, Santa Cruz Biotechnology; TrkB, rabbit, 1:500, ab33655, Abcam; β-actin, rabbit, 1:1000, 4967, Cell Signaling Technology). Primary antibodies were visualized with horseradish peroxidase–conjugated anti-rabbit secondary antibody (1:8000; PI-1000, Vector Laboratories) and signal detection using ECL Prime (GE Healthcare) and an Alliance Western blot imaging system (UVItec Ltd.).
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