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78 protocols using ab52917

1

Immunohistochemical Analysis of Cryosectioned Organoids

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Freshly collected organoids were flash frozen in Tissue-Tek OCT compound (Sakura, Torrance, CA). Embedded organoids were cryosectioned into 7 μm sections onto glass slides. Sections were incubated with primary antibody diluted in PBST (1:200) overnight at 4 °C or 2 hrs at room temperature: mouse anti-alpha sarcomeric actinin (αSA) (Abcam ab52917), rabbit anti-vimentin (Abcam ab92547), mouse anti-CD31 (BD Biosciences 550274), rabbit anti-von Willebrand factor (vWF) (Abcam ab6994), rabbit anti-vascular endothelial growth factor (VEGF) (Abcam ab52917), rabbit anti-HIF 1α (Abcam ab51608). Sections were incubated with complement secondary antibodies diluted in PBST for 2 hr at room temperature: goat anti-mouse Alexa Fluor 546 (Invitrogen A11030), goat anti-rabbit Alexa Fluor 647 (Invitrogen A21244). Nuclei were counterstained with DAPI (Molecular Probes/Invitrogen R37606) diluted in PBST for 15 min at room temperature. TCS SP5 AOBS laser scanning confocal microscope (Leica Microsystems, Inc., Exton, PA) was used for imaging, with the majority of images being composite stacks of 5–8 μm at 0.5 μm steps.
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2

Exosome-Induced Angiogenesis in Nude Mice

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Twelve eight-week-old female nude/nude mice (Beijing Vital River Laboratory Animal Technology Co., China) were randomly assigned to four groups. In brief, 2 × 106 HUVECs were suspended in 200 μL Opti-MEM (Gibco, Cat.50985091) with 100 μg exosomes or PBS, and an equal volume of Matrigel was added to the mixture. The above cell mixture was injected subcutaneously on both sides of the back of each nude mouse. The grafts were harvested 2 weeks after the injection and were isolated for photography. Immunohistochemical staining for CD31 (Abcam, Cat. ab28364) and α-SMA (Abcam, Cat. ab108424) and immunofluorescence staining for VEGFA (Abcam, Cat. ab52917) were performed to analyze angiogenesis.
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3

Xenograft Neovascularization Analysis Protocol

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The subcutaneous xenografts from all mouse groups were extracted in the sixth week following transplantation, and the gross morphology and texture of the xenografts were visually assessed. The xenografts were preserved with 4% paraformaldehyde at 4°C overnight. HE and immunohistochemical staining (CD31, VEGFA, CD105) were performed according to the kit guidelines. HE staining was used to determine the existence of a hydrogel within the xenograft, the absence of the hydrogel grid structure, and the presence of tumor cells within the hydrogel. Immunohistochemical staining for CD31 (anti-human/mouse CD31 (ab28364), Abcam) and VEGFA (anti-human/mouse VEGFA (ab52917), Abcam) was employed to assess neovascularization in the xenograft. CD105 (anti-human CD105 (ab114052) and anti-human/mouse CD105 (ab107595), both from Abcam) were used to evaluate the vascular component of the xenografts. In this research, the source of neovascularization in the xenografts was examined by double immunofluorescence staining for vWF (rabbit anti-human vWF (ab154193), Abcam) and glial fibrillary acidic protein (GFAP) (mouse anti-human GFAP (MAB2594), R&D Biosystems), following the manufacturer’s guidance.
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4

Immunohistochemical Analysis of Angiogenic Markers

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Deparaffinized sections were subjected to immunohistochemistry as previously described. Antigens were retrieved on the slides using 10 mM sodium citrate and heated in a pressure cooker for 10 min. The slides were then immersed in H2O2 in methanol for 10 min to eliminate endogenous peroxidase activity. The sections were incubated with Goat serum for 10 min to reduce nonspecific reactions. They were then incubated with anti-CD31 pAbs (GB11063-2, Servicebio, Wuhan, China); antiSIRT1mAbs (ab110304, Abcam, USA), and anti-VEGFA mAbs (ab52917, Abcam) at 4 °C overnight. The slides were incubated with goat resistant mouse IgG polymer for 10 min. Then, they were incubated with HRP for 10 min. Color development was performed using a DAB substrate for approximately 5 min, and the specimens were counterstained with hematoxylin. The sections were examined under a microscope. SIRT1 and VEGF-A protein expression levels were quantified by blindly calculating the average optical density (AOD) in Image-Pro Plus (version 5.0). Each image was analyzed to obtain the integrated optical density (IOD) and area of the pixel (AREA) of a tissue. AOD was determined using the following equation: (AOD = IOD/AREA) [53 (link)]. Intrathrombotic CD31-positive microvascular density (MVD) was measured [34 (link)]. All measurements were performed by an examiner without prior knowledge of the experimental procedure.
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5

ATAD2 and VEGFA Protein Detection

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The proteins were extracted by ice cracking. SDS-PAGE was used to separate the proteins. Subsequently, the target proteins were transferred onto a polyvinylidene difluoride membrane at low temperatures, followed by treatment with 5% milk for 50 min. Immediately afterward, the membranes were incubated overnight at 4°C with a primary antibody (ATAD2, 1 : 1000, #78568, Cell Signaling; VEGFA, 1 : 10000, ab52917, Abcam; and GAPDH, 1 : 5000, abs132004, Absin). In the following day, the membranes were removed and subjected to the process of PBST washing, treatment with a secondary antibody (anti-rabbit IgG, HRP-linked antibody, 1 : 5000, #7074 Cell Signaling), PBST rinsing, and, finally, exposure to the chromogenic apparatus by dropwise addition of the chromogenic solution for color development.
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6

Histological Analysis of Femoral Heads

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Femoral-head samples were fixed for 48 h in 4% paraformaldehyde and decalcified for 4 weeks in 10% ethylenediaminetetraacetic acid (G1105, EDTA, Servicebio, China). Then, the samples were embedded in paraffin and cut into 6 μm thick slices. H&E staining was performed to observe the general view of specimens and to evaluate the trabecular structure. For TRAP staining, paraffin sections were stained with a TRAP staining kit (G1050, Servicebio, China). Briefly, the paraffin sections were stained with tartrate buffer containing naphthol AS-BI phosphate and pararosaniline chloride at 37 °C for 1 h in darkness and counterstained with hematoxylin. Section images were acquired using an IX71-SIF microscope (Olympus, Japan). IHC staining was performed to define the expression of CST, as well as osteogenesis-, vascular-, and pathway-related markers. In brief, sections were dewaxed and gradient hydrated to retrieve antigens. Then, primary antibodies, including CST, osteocalcin (ab133612), VEGFA (ab52917), and CD31 (ab9498), and corresponding secondary antibodies (all from Abcam Cambridge, UK) were incubated. The chromogenic reaction was induced by a DAB Kit (Beyotime, China). The tissue sections were observed with an IX71-SIF microscope (Olympus, Japan). IHC-positive cells and areas were measured using ImageJ and counted by two independent observers.
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7

Immunofluorescence Staining of Transfected Cells

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The transfected cells were harvested and washed with PBS and then fixed in fresh paraformaldehyde (4%) for 20 min at 37°C. Then, they were treated with Triton X-100 (0.5%) to increase permeability, followed by washing with PBS. After that, the cells were incubated with rabbit or mouse anti-human eNOS (18985-1-AP, Proteintech, USA), p-AKT (66444-1-lg, Proteintech, USA), VEGFA (ab52917, Abcam, Cambridge, MA, USA), or p-VEGFR1 (AF4170, R&D Systems, USA) antibody for 3 h at room temperature. The cells were washed using PBS followed by incubation with goat anti-rabbit/anti-mouse Cy3 or fluorescein isothiocyanate (FITC) antibody for 60 min at room temperature in dark. The cells were then subjected to confocal microscopy for capturing images.
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8

Quantifying VEGF Protein Levels

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After electrophoresis, proteins were transferred to nitrocellulose membranes (Bio-rad, 1704159) and blocked for 1 h with 5% skimmed milk in TBST (0.1% Tween 20 in TBS). Primary antibodies [anti-VEGF-B (R&D systems, MAB3372) and anti-VEGF-A (Abcam, ab52917)] were incubated overnight at 4°C. After washes, membranes were incubated with secondary peroxidase coupled antibodies [anti-mouse (R&D systems, HAF018) and anti-rabbit (Invitrogen, 31460)] for 1 h at RT. Target proteins were detected using ECL western blot detection solution (Thermo Scientific, 32132).
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9

Immunohistochemical Analysis of S100A8 and VEGF Expression

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The expression of S100A8 in paraffin-embedded clinical samples was investigated using IHC, according to a previously described protocol (28 (link)). Antibodies against S100A8 (1:200; cat. no. ab180735; Abcam) and VEGF (1:200; cat. no. ab52917; Abcam) were used. IHC staining of S100A8 and VEGF revealed both membrane and cytoplasmic localization. Hematoxylin and eosin (H&E) staining of liver and spleen tumor tissue sections from mice was performed, as previously described (29 (link)). The immunostained tissue slides were scored according to stain intensity (0, no staining; 1, light staining; 2, moderate staining; and 3, intense staining) multiplied by a distribution score (1, staining of 0–33%; 2, staining of 33–66%; and 3, >66% staining). The final score was grouped as low expression [negative, (0) or low (1 (link)–2 (link)) scores], medium expression (moderate score, 3–4) or high expression (high score, 6–9) for further non-parametric tests. Each immunostained slide was scored by two pathologists in a double-blind manner using a light microscope.
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10

Cell Culture and Hypoxia Assay

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A549, H226, HUVEC and HEK 293 T cells were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). HUVECs and A549 cells were cultured with F-12 K medium. H226 cells were cultured with 1640 medium. HEK 293 T cells were cultured with DMEM medium. All mediums were added fetal bovine serum to a final concentration of 10%. All cells were cultured with 5% (v/v) CO2 at 37 °C. For hypoxia, cells were cultured with 1% (v/v) O2 for 6 h. Antibodies for GSK3α (4337; 9338), β-actin (3700), HIF1β (5537; 3414), HIF1α-OH (3434), and HIF1α (36,169; 79,233) were purchased Cell Signaling Technology. Antibodies for VEGFA (ab52917), and flag (ab205606) were purchased from Abcam company.
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