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Thioflavin t

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Thioflavin T is a fluorescent dye used in the detection and quantification of amyloid fibrils. It exhibits enhanced fluorescence upon binding to these protein aggregates. The dye is commonly utilized in various research applications, including the study of protein misfolding and amyloidosis.

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296 protocols using thioflavin t

1

Thioflavin T Binding Assay for Insoluble Protein

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Samples were normalized by the concentration of insoluble protein. Fluorescence readings of the insoluble fractions were performed in the presence of 5 μM thioflavin T (Sigma), using a Hitachi F7000 Fluorescence Spectrophotometer (excitation 435 nm, emission 485 nm). Fluorescence signal of the samples in absence of thioflavin T and a thioflavin T blank were used as background. For thioflavin T experiments in protein degraded samples, we subjected the insoluble fractions to a strong digestion treatment with 1 mg/ml proteinase K (PK, Sigma) for 1 h at 37°C, digestion was stopped with 5 mM phenylmethylsulfonyl fluoride (PMSF, Sigma). Digested products were mixed with 5 μM thioflavin T (Sigma), and fluorescence was determined as stated above.
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2

Immunofluorescence Staining and Live-Cell Imaging

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Cells were fixed with 2% paraformaldehyde for 15 minutes., permeabilized with 0.1% Triton-X-100 for 2 min and stained as described (Follit et al., 2006) . In some cases, fixed cells were treated with 0.05% SDS for 5 min before prehybridization to retrieve antigens. The primary and secondary antibodies are described in Table S2. For thioflavin T fluorescence assay, cells were incubated with 5 μM thioflavin T (Millipore Sigma) for 10 minutes before fixed (Beriault and Werstuck, 2013) .
For live-cell imaging, cells were seeded in 35 mm glass bottom, collagen-coated dishes (MatTek Corporation) and cultured for at least 24 hours before imaging.
Confocal images were taken with a LSM910 equipped with a 63X objective and converted to a maximum projection with ZEN 3.1 blue edition (Zeiss).
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3

Insulin Aggregation Kinetics Assay

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Bovine insulin, thioflavin-T (ThT), all buffer chemicals and all solvents were purchased from Sigma-Aldrich. Solvents were of chromatography grade. Bovine insulin was purchased in powdered form (Product No I5500). thioflavin-T (ThT) was first dissolved in tetrahydrofuran and re-crystallized to remove impurities and then dissolved in distilled water from a milli-Q water system (Merck Millipore, Darmstadt, Germany). The solution was filtered through a 0.2 µm syringe filter to remove undissolved particulates. The ThT concentration was determined by absorption on a Cary 50 absorption spectrophotometer (Agilent Technologies, Santa Clara, California, US), using an extinction coefficient of 36,000 M−1 cm−1 at 412 nm. Insulin stock solutions were prepared by dissolving powdered bovine insulin in a small amount of 100 mM HCl to ~ 15 mg/mL, followed by dilution into one of the following buffers: 100 mM glycine–HCl, pH 2.2; citrate–phosphate buffer prepared from 100 mM citrate and 200 mM Na2HPO4 (McIlvaine 1921 ), spanning from pH 3.0 to 7.0, or 200 mM ammonium acetate, pH 4.0. The insulin concentration was determined by absorption, using an extinction coefficient of ε280 = 5,800 M−1 cm−1.
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4

Thioflavin T Fluorescence Assay for Protein Aggregation

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Samples for Thioflavin T fluorescence analyses were prepared by combining 74 μl of each sample, 100 μl of 40% acetonitrile, and 1 μl of 10 mM Thioflavin T (CAS# 2390-54-7 purchased from Sigma-Aldrich) and measured in the wells of a 96 well plate (Microplate, 96 well, PS, F-bottom, μCLEAR, black, med. binding, Greiner Bio-one). Thioflavin T fluorescence was determined with a BioTek Synergy Mx plate reader (Serial# 250843) every 15 min for up to 24 h, with short shaking before each read. The excitation wavelength was 444 nm and fluorescence was measured at 484 nm. A well containing 1 μl 10 mM ThT in 40% MeCN and 174 μl 40% MeCN was used as a baseline. The plate was held at 37°C for all 24 h.
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5

Pancreatic Tumor Histology and Morphometry

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Specimens were routinely sampled from both the head and distal regions adjacent to the tumor site and fixed in 10% buffered formalin. Only tumor-distant tissue (at least 0.5 cm distant from the tumor margin) was analyzed. Several consecutive 4 mm thick sections of paraffin-embedded pancreas specimens from both the proximal and/or distal regions remote from the tumor were stained as follows[11 ,14 (link)]: (1) Hematoxylin and eosin for general histological appearance; (2) hematoxylin and insulin for the determination of fractional β-cell area (immunohistochemistry); and (3) quadruple insulin, glucagon, thioflavin T and DAPI staining for the determination of β-cell area, α-cell area and amyloid deposits (thioflavin T#T1892-25G and DAPI#28718-90-3, Sigma; insulin#EM80714 and glucagon#ET1702-20; Huabio). Together with conventional microscopic observations, morphometric analysis of the islet and islet endocrine cells was conducted on immunostained sections.
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6

Oligonucleotide Fluorescence Assay with Thioflavin T

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DNA oligonucleotides (Integrated DNA Technologies) were heated at 90°C for 10 min in millipure water at 4, 20, or 40 μM. The oligonucleotides were diluted 1:2 in 100 mM Tris-HCl (pH 7.5), 100 mM KCl and slowly cooled to room temperature. Oligonucleotides were mixed with 1 μM thioflavin T (Sigma-Aldrich) and added to a 96-well assay plate to yield 1, 5, and 10 μM final concentrations of oligonucleotide and 0.5 μM final concentration of thioflavin T. Samples were mixed in triplicate. Fluorescence intensity was measured with a plate reader (Tecan Infinite M200) with excitation at 425 nm and emission at 490 nm.
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7

Quadruplex DNA Detection Using Thioflavin T

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thioflavin T fluorescence is reported to be enhanced in the presence of quadruplex DNA but not in the presence of other common oligonucleotide structures [55 (link)]. To assess potential quadruplex formation, thioflavin T emission spectra were determined at 25 °C as described by de la Faverie et al. [55 (link)] with 0.5 μM thioflavin T (Sigma) and 1 μM oligodeoxynucleotide annealed in tBAP/1 mM EDTA/50 mM KCl, pH 7.0. thioflavin T was excited at 412 nm (1 nm spectral band pass) and emission spectra were recorded from 420 to 620 nm (1 nm resolution, 2 nm spectral band pass) using a SpectraMax-3 fluorometer (Horiba Instruments, Edison, NJ). The integration time was 1 s and two spectra were averaged. The emission spectra were corrected by subtracting a buffer blank. The oligonucleotide 1XAV (a c-myc analog) was used as a positive control for fluorescence enhancement and its complementary (unfolded) DNA served as a negative control for non-specific fluorescence. The degree of fluorescence enhancement was calculated as the ratio of fluorescence intensities at the 488 nm emission maximum of the sample relative to the emission intensity of thioflavin T alone (F/F0).
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8

Thioflavin T Fluorescence for Amyloid-β Aggregation

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Fluorescence analysis using Thioflavin T made it possible to monitor the aggregation process of the pathological form of β-amyloid peptide 1-42 (Sigma Aldrich, St. Louis, MI, USA). The experimental protocol was carried out similarly to that described in [58 (link)] with some modifications. The registration of changes in the fluorescence of Thioflavin T (10 µM, Sigma Aldrich, St. Louis, MI, USA) was performed on a multifunctional tablet analyzer Cytation™3 (BioTek Instruments, Inc., Winooski, VT, USA) at λex = 450 nm, λem = 480 nm. The fluorescence intensity of the solution without Aβ1-42 was subtracted from the fluorescence values of solutions containing protein, due to the need to subtract the background fluorescence.
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9

Histology and Microscopy of Eyelid Skin and Lens Tissue

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Eyelid skin tissue was obtained during blepharoplasty for upper eyelid dermatochalasis (performed by B.D.-O., Figure 3) and lens tissue was obtained during cataract surgery (performed by V.P.) of the patient II-1. The tissue samples were fixed in formalin and embedded in paraffin. Hematoxylin and eosin, Congo red and thioflavin T stains were performed. Electron microscopic examination of the skin sample was performed on the formalin-fixed tissue.
Congo red staining was performed automatically in Ventana Benchmark Special Stains stainer with Congo Red Staining Kit (Ventana Medical Systems Inc., Tucson, AZ, USA). For thioflavin T staining, slides were incubated in 1% working solution of thioflavin T for 7 min (Sigma Aldrich, Darmstadt, Germany), rinsed in deionized water and then kept in 1% CH3COOH for 20 min. Afterwards, the slides were rinsed and coverslipped directly from deionized water with Dako Fluorescence Mounting Medium (DAKO, Glostrup, Denmark).
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10

Nuclei Isolation and Analysis

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Nuclei from dTomato-NLS mRNA injected oocytes were harvested in OR2 and immediately transferred to a depression slide with 250 µL of OR2 supplemented with Thioflavin T (Sigma) to 50 µM. Lucifer Yellow experiments were performed in identical conditions without Thioflavin T. For SDS-PAGE analysis, soluble proteins were depleted from isolated nuclei via incubation in ~5 mL of OR2 for the indicated times.
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