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5 protocols using dako target retrieval solution ph 6

1

Immunohistochemical Detection of H3.3-G34W Mutation

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For immunohistochemical detection of the H3.3-G34W mutation formalin fixed paraffin embedded GCT tissue sections were deparaffinized in Roti-Histol (Carl Roth GmbH, Karlsruhe, Germany) and rehydrated in isopropanol. Antigen retrieval was performed using Dako target retrieval solution pH 6 (Dako, Hamburg, Germany) for 5 min at 121 °C in a pressure cooker. Sections were blocked for 30 min at room temperature using PBS supplemented with 5% bovine serum albumin (BSA). The primary rabbit anti-H3G34W antibody (Active Motiv, Carlsbad, USA) was diluted 1:1000 in PBS/1% BSA and incubated over night at 4 °C. The signal was amplified using the BrightVision +Poly-AP kit (VWR, Darmstadt, Germany) according to the manufacturer´s instructions. Samples were counterstained with hematoxylin (Carl Roth GmbH) and mounted using Neo-Mount (Merck, Darmstadt, Germany). All used antibodies are listed in Supplementary Table 1.
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2

Paraffin-Embedded Tissue Immunohistochemistry

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Immunohistochemistry (IHC) was performed on paraffin-embedded 10 μm-sections. Slides were deparaffinized, and antigen retrieval was performed using Dako Target Retrieval Solution pH 6 (Dako, Carpinteria, CA). Sections were stained by the immunoperoxidase technique using DAB substrate (Dako EnVision System HRP) and counterstaining with hematoxylin. After staining, slides were viewed on a Nikon Eclipse E400 microscope, and images captured using Spot Insight digital camera with Spot software (Diagnostic Instruments, Sterling Heights, MI).
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3

Immunohistochemistry for iNOS Expression

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Tissue sections were exposed to deparafinization, hydration, and endogenous peroxidase blocking. Antigen retrieval was performed by Dako Target Retrieval Solution, pH6 (Dako, Carpinteria, CA), in a pressure cooker set at 95°C for 22 minutes, followed by gradual cooling for 20 minutes. Tissues were incubated for 30 minutes at normal room temperature with an anti-iNOS polyclonal antibody (dilution 1:75). The staining reaction was determined with an enzyme-conjugated polymer complex adapted for automatic stainers (Ventana Medical Systems, Tucson, AZ).
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4

Immunohistochemical Analysis of Apoptosis Markers

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Mice xenografts were immediately fixed with 4% formaldehyde and embedded in paraffin. IHC for BAX and BCL-w was performed on 5-μm-thick paraffin-embedded sections from tumor biopsies from mice treated with exosomes or with PBS (control). Isotype-matched irrelevant antibodies were used as a negative control. Following rehydration, the antigen was unmasked for 45 minutes in a 95°C microwave with Dako Target Retrieval Solution (pH 6; Dako, Carpinteria, California, USA). Endogenous peroxidase was blocked for 10 minutes with Dako peroxidase blocking reagent, and non-specific binding was blocked for 20 minutes with Dako protein block. The primary antibodies anti-human BAX and BCL-w (1:100 diluition, Santa Cruz Biotechnology) were added and incubated for 1 hour at room temperature. For control staining, primary antibodies were replaced with irrelevant isotype-matched antibodies (AbCam, Cambridge, UK). The slides were then incubated for 30 minutes with peroxidise-conjugated Dako EnVision polymer, and peroxidase activity was visualized with diaminobenzidine chromogen (Dako). Slides were lightly counterstained with hematoxylin before dehydration and mounting in DePex (VWR International, Oslo, Norway).
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5

Tissue Immunofluorescence for CFP and RFP

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Tissue immunofluorescence was realized as described20 (link). Briefly, 4 µm paraffin-embedded tissue section placed on a glass slide was de-paraffinized in three baths of xylene for 5 min and rehydrated in a series of ethanol baths. For antigen retrieval, slides were incubated in DAKO Target Retrieval Solution, pH6 (DAKO, Carpinteria, California, USA), for 20 min in a microwave oven. Slides were incubated with mouse anti-CFP (Santa Cruz Biotechnology, Dallas, Texas, USA, sc9996, dilution 1/50) and rabbit anti-RFP (Abcam, Cambridge, UK, ab62341, dilution 1/50) primary antibodies for 1 h at RT after proteolytic epitope retrieval in citrate buffer (pH 6.0). Then, Alexa Fluor 488 goat anti-mouse (Molecular Probes, Eugene, Oregon, USA, A11001, dilution 1/400) and 647 goat anti-rabbit (Molecular Probes, A21245, dilution 1:400) secondary antibodies were incubated for 1 h at RT. Slides were mounted using the Vectashield mounting medium plus DAPI (Vector Laboratories). Images were acquired on a Zeiss Cell Observer microscope (Zeiss, Oberkochen, Germany).
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