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8 protocols using solarix 9.4t

1

Characterization of HGA Solutions by FT-ICR MS

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The HGA solutions were measured by Fourier transform ion cyclotron resonance mass spectrometry using SolariX 9.4 T (Bruker Daltonics, Bremen, Germany). Mass spectra were calibrated using external calibration with a tuning‐mix (Agilent, Santa Clara, CA, USA). The following instrument parameters were used: the sample flow rate was 2 μL/min, the desolvation plate temperature was 150°C, the rate of N2 drying gas was 2.5 L/min, the rate of N2 nebulizing gas was 1.5 L/min, and the capillary voltage was 4.5 kV for the negative ion detection mode.
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2

MALDI-MSI Metabolite Profiling Protocol

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MALDI-MSI experiments were performed on a MALDI-FTICR MS instrument (SolariX 9.4T, Bruker Daltonics) equipped with a SmartBeam II laser source (2-kHz Nd: YAG×3 laser at 355 nm; Bruker Daltonics). Before analysis, the method was calibrated with DHB and sodium trifluoroacetate. All images were collected using the minimum laser setting with a pixel spacing of 50 or 25 μm in both x and y dimensions. Data were collected in positive ion mode from m/z 100 to 1000 with 400 laser shots averaged per pixel, and the laser is fired at a repetition rate of 1000 Hz. The device parameters for MALDI-MSI were chosen as follows: plate offset voltage, 100 V; deflector plate voltage, 180 V; collision voltage, −10 V; DC extract bias, 0.8 V; collision radio frequency amplitude, 1000 Vpp; and time of flight, 0.7 ms. All data were processed using the FlexImaging 3.0 software and SCiLS Lab software (Bruker Daltonics, Germany). High-resolution MS spectra were used to distinguish different compounds, and the identification of compounds was achieved by precisely matching m/z with the HMDB (HMDB 5.0, www.hmdb.ca) and METLIN database (https://metlin.scripps.edu). The mass error tolerance was set at 10 parts per million (ppm).
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3

Spectroscopic Characterization of Compounds

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Liquid 1H NMR spectra were obtained in CDCl3 using the residual CHCl3 as the internal reference (7.26 ppm) using a Bruker 400 spectrometer. 1H NMR peaks were labeled as singlet (s), doublet (d), triplet (t), quartet (q), and multiplet (m). The coupling constant values were reported in Hertz (Hz). Liquid 13C NMR spectra were conducted at 100 MHz in CDCl3 using residual CHCl3 as the internal reference (77.0 ppm). GC-MS analysis was performed using gas chromatography-mass spectrometry (GC-MS, 7890A and 5975C, Agilent). High-resolution electrospray ionization mass spectrometry (HR-ESI-MS) was performed on a Bruker FT-ICR-MS instrument (Solarix 9.4T).
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4

Comprehensive Analytical Techniques for Compound Characterization

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Reactions were monitored by TLC using silica gel-coated aluminum sheets (Qingdao Haiyang Chemical Co., Qingdao, China) and visualized in UV light (254 nm). 1H-NMR and 13C-NMR assays were recorded on a Bruker AVANCE 500 NMR spectrometer (Fällanden, Switzerland), and chemical shifts are reported in form of δ (ppm). Deuterated chloroform, deuterated methanol, or deuterated DMSO served as the solvent (Beijing InnoChem Science and Technology Co., Ltd., Beijing, China). HR-MS spectra were performed on high-resolution ESI mass spectrum (Solarix 9.4T, Bruker, Germany). Melting points were measured at a rate of 5 °C/min using an X-5 micro melting point apparatus (Beijing Tech Instrument Co., Ltd., Beijing, China). The specific rotation of the synthesized compounds was measured using P-1020 polarimeter (Jasco, Tokyo, Japan). Cellular morphologies were observed using an inverted fluorescence microscope (Olympus IX71, Tokyo, Japan). Mechanisms of apoptosis were detected by flow cytometry (BD FACSCanto II, San Jose, CA, USA). Silica-gel column chromatography was performed using 200–300 mesh silica gel. The yields were calculated based on the last step reaction. All solvents and chemicals used were analytical or high-performance liquid chromatography grade. The abilities of ALT and AST in serum were measured with assay kit (Nanjing Jiancheng Biotechnology Co., Ltd., Nanjing, China).
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5

MALDI-MS Imaging of Neurotransmitters

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The MALDI‐MS imaging method followed Yang W's description
24 (link) with some modifications. The brain tissues of rats were isolated 1 h after treatment and frozen in liquid nitrogen immediately, then embedded in 2% CMC‐Na and frozen overnight at −80°C. Striatum sections (20 μm) were prepared by the cryostat microtome (Leica CM1950), then transferred onto conductive ITO glass slides (Bruker) and stored at −80°C until analysis. 2,4,6‐Trimethylpyrylium tetrafluoroborate (TMP‐TFB, Aladdin) was used as the derivatization reagent (7.6 mg/mL in methanol buffered with 3.5 μL of trimethylamine), and α‐cyano‐4‐hydroxycinnamic acid (CHCA, Aladdin; 10 mg/mL, prepared in 70% methanol solution containing 0.1% trifluoroacetic acid) was used as the MALDI matrix. MALDI‐MS imaging experiments were performed on the MALDI‐FT‐ICR mass spectrometer (Solarix 9.4 T, Bruker) in positive‐ion mode. Set the pixel size of the imaging resolution at 80 nm to obtain the optimal acquisition performance. MS imaging data were visualized using Fleximaging (Bruker). After the data were normalized by the total ion current, the DA mass spectrum peak (m/z 258.1502 ± 0.002) was determined. The colored spots in the image represent the location of the neurotransmitter, and the color of each spot is related to the signal intensity detected by the laser at each pixel.
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6

High-Throughput MALDI-MSI Imaging Workflow

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A Bruker rapifleX MALDI Tissuetyper time-of-flight mass spectrometer (Bruker Daltonik, Bremen, Germany) was used. Images were generated with a 50 × 50 μm pixel size. The measurements were performed using reflectron mode with 200 shots per pixel at a laser frequency of 10 kHz. MSI data was acquired with a mass range of m/z 100–1000 for lipids in both positive and negative ion mode and m/z 40–1000 for metabolites in negative ion mode.
As the rapifleX offers high speed data acquisition but lacks sufficiently high mass resolution required to differentiate between specific amino acid masses, the measurements were complemented with matrix assisted laser desorption/ionization-Fourier transform-ion cyclotron resonance mass spectrometry imaging (MALDI-FTICR-MSI) (solariX 9.4 T, Bruker Daltonics, Bremen, Germany). High mass resolution data was acquired in a mass range of m/z 100–600 in positive ion mode with a 75 µm spatial raster width, 250 shots per pixel, and a laser frequency of 2 kHz. Pre-defined matrix peaks were selected as reference for online lock mass calibration.
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7

High-Resolution MALDI-TOF and FTICR-MSI

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High-speed MALDI-TOF MSI
analysis was performed on a RapifleX MALDI Tissuetyper (Bruker Daltonics
GmbH, Bremen, Germany) equipped with a 10 kHz Nd:YAG (355 nm) laser.
The instrument was operated in a positive ionization reflectron mode,
and peptide spectra were acquired in a mass range m/z 620–3000 with a spatial raster of 50 μm
and 500 averaged laser shots per pixel. An experimental mass resolution
of 15 000 was achieved at m/z 1000. High mass resolution MALDI-Fourier-transform ion cyclotron
resonance (FTICR) MSI experiments were performed with a Solarix 9.4
T (Bruker Daltonics), achieving an experimental mass resolution of
200 000 at m/z 1000. MSI
data were acquired within a mass range of m/z 800–3000 (1 × 106 data points)
in a positive ionization mode with a transient time of 2.94 s. The
spatial raster width was 70 μm. At each pixel, 600 shots were
accumulated with a laser frequency of 500 Hz. Data acquisition was
controlled using ftmsControl and FlexImaging 4.1 (Bruker Daltonics).
All MSI measurements were preceded by an instrument calibration using
Red phosphorus. MALDI-TOF analysis was performed on 36 tissue samples
from nine patients. MALDI-FTICR MSI measurements were performed on
selected samples (four conditions from one patient) to improve the
identification of the proteins behind the relevant peptides obtained
from TOF analysis.
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8

Characterization of Methylbenzene Reaction

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The liquid products from the reaction of MB over [BMMIm]Br-Pd/C under the N2 atmosphere were dissolved in methanol and analyzed by high-resolution electrospray ionization mass spectrometry (HR-ESI-MS, Bruker FT-ICR-MS (Solarix 9.4T)). The ionization method and mode of detection employed were indicated for the corresponding experiment, and all masses were reported in atomic units per elementary charge (m/z) with an intensity normalized to the most intense peak.
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