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26 protocols using aptms

1

Glass Slide Silanization Protocol

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Samples were prepared following protocols described previously [29 (link)–31 (link)]. The glass slides (1 cm × 1 cm) were cleaned for 30 min in a bath “piranha solution” comprising 4 parts sulfuric acid (H2SO4; Merck) to 1 part hydrogen peroxide (H2O2; Merck) at 60 °C. After rinsing with methanol (CH3OH) spectrophotometric grade (Merck), the slides were dipped for 24 h in vials containing (3-aminopropyl)-trimethoxysilane (APTMS; Sigma-Aldrich) in CH3OH solution (1 APTMS:4 CH3OH).
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2

Glass Surface Aldehyde Functionalization

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To facilitate the immobilization of EVs, glass coverslips were chemically functionalized to render a layer of aldehyde groups. Specifically, glass coverslips were plasma-treated for 1 min at a high power level (18 W) using a plasma cleaner (Harrick Plasma, Ithaca, NY), followed by sequential incubations in 4% 3-aminopropyltrimethoxysilane (APTMS; Sigma-Aldrich) in isopropanol for 30 min and then 1% glutaraldehyde solution (Alfa Aesar) for 30 min.
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3

Optimizing Silanization of Si Nanoparticles

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The silanization step was performed by adding a solution of 3-aminopropyltrimethoxysilane (APTMS) (Sigma Aldrich, Saint-Quentin Fallavier, France) to Si NPs solutions at ambient condition. The obtained mixture was stirred at room temperature for 24 h. In total, three volumes of 1 mL, 0.5 mL and 80 µL of APTMS were tested to find the optimized condition of silanization.
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4

Preparation of Functionalized Polyacrylamide Hydrogels

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For preparing polyacrylamide (PA) gel substrates, glass bottom dishes were sequentially treated with 3‐Aminopropyltrimethoxysilane (281 778, APTMS, Sigma‐Aldrich, MO, USA) for 10 min and 0.5% glutaraldehyde (G6257, Sigma‐Aldrich, MO, USA) for 30 min. The PA‐gel premixture was prepared using acrylamide (A8887, Sigma‐Aldrich, MO, USA) and N,N'‐methylene bisacrylamide (M7279, Sigma‐Aldrich, MO, USA) in a 1:1 ratio. Then, 0.05% ammonium persulfate (A3678, Sigma‐Aldrich, MO, USA) and 0.15% N,N,N´,N´‐tetramethylethylenediamine (T9281, Invitrogen, MA, USA) were added into the mixture. PA hydrogel stiffness was determined by concentrations of acrylamide and bisacrylamide.[81
] The mixed PA solution was incubated in pre‐treated glass bottom dishes and covered with a dichlorodimethylsilane (Sigma‐Aldrich, MO, USA)‐treated glass coverslip to flatten the gel. After polymerization, the coverslip was removed from the PA gel. For functionalization of the PA hydrogel surface, 50 mm sulfosuccinimidyl‐6‐(4′‐azido‐2′‐nitrophenylamino) hexanoate (22 589, sulfo‐SANPAH, Thermo Fisher Scientific, MA, USA), a heterobifunctional cross‐linker, was supplemented on the PA hydrogel and exposed to UV light for 5 min. After washing in 200 mm HEPES, the PA hydrogel was coated with 50 µg ml−1 FN and left overnight. Experiments were performed after washing with PBS before use.
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5

Silanization of Sensor Surfaces

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The modification of the sensors was carried out in Teflon containers using a 3 mM solution of silanes in anhydrous HPLC grade acetonitrile as solvent (Sigma-Aldrich, St. Louis, MA 01821, USA), dried using CaH2 (24 h) and filtered before use over a 0.2 µm filter).
APTMS (shown in Figure 3), UPS, EDA, DMS and ODS were obtained from Sigma-Aldrich and used as received. APhS was obtained from ABCR Co. (St. Louis, MA 01821, USA) and also used as received. The silanization reaction took place in closed Teflon containers for 6 h at 25 °C. The Teflon containers was purged with nitrogen prior to and during salinization. After completion of the salinization step, the wafers were rinsed with acetonitrile (2×), a mixture of acetonitrile and ethanol = 1:1 (2×), ethanol (2×) and dried at 80 °C for 15 min in a clean oven, to remove the physisorbed silane molecules and any traces of solvent from the surface. The XPS characterization was carried out immediately upon cooling.
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6

Synthesis of FITC-Labeled Silica Nanoparticles

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This procedure was done following the steps outlined by Lee and Yang (43 ). Briefly, FITC (Sigma-Aldrich) molecules were covalently bonded with APTMS (Sigma-Aldrich). First, 0.0015 g of FITC was dissolved in 2 ml of ethanol and mixed with 0.237 ml of APTMS for 12 hours under stirring with a Teflon-coated magnetic stir bar. Meanwhile, silica nanoparticles with a diameter of 200 nm (dispersed in deionized water), purchased from General Engineering & Research (San Diego, CA), were redispersed in ethanol in a sonication bath for 1 hour. Then, 32.5 ml of an ethanol suspension containing 1 wt % silica particles was mixed with 2.755 ml of ammonia for 10 min. Then, 0.689 ml of 0.1 M NaOH aqueous solution was poured into the bath to activate the silanol groups on the particle surface.
To couple the dye to the particles, 208 μl of as-prepared, FITC-APTMS solution was added to the silica suspension. After 5 min of thorough mixing, 40 μl of TEOS (Sigma-Aldrich) was added dropwise, and the mixture was reacted for 22 hours under stirring. To remove unreacted dye molecules, the resultant dye-coupled particles were washed with ethanol three times by centrifuging and replacing the supernatant with fresh ethanol.
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7

Nanocomposite Coating Application on Biomedical Devices

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The nanocomposite, polyurethane-based MAAC was provided by TriPhyll, Inc. Hydrophobic SiO2 nanoparticles, which are functionalized with polysiloxane, were dispersed in a two-part solvent-borne polyurethane coating. The liquid-phase MAAC was applied to the inner faces of PVC-DEHP containers (for RCC; Leukotrap RC system, Haemonetics, Boston, MA, USA) and BTHC-PVC (for PC; Reveos pooling set, Terumo BCT, Lakewood, CO, USA). The inner walls of the PC storage bags have one smooth and one textured surface. The MAAC was applied on the smoother side of the PC storage bags. For RCC units, both inner walls were textured, and the coating was applied on either side. For the other polymeric materials (PM) commonly used in biomedical devices (i.e., silicone and polyurethane), MAAC was applied directly on sections of 2500 mm [2 (link)]. Before each application, a 3-aminopropyl trimethoxy silane (APTMS) primer (Sigma; 2% APTMS, 6% distilled water and 92% isopropanol) was deposited on the surfaces to promote coating adhesion [42 (link)]. The liquid-phase MAAC was then added using a metallic rod specifically designed to apply a 50 µm-thick coating (with RD specialties) at the surface of each PM under study. Each MAAC-treated sample was then dried at 80 °C for one hour or until complete MAAC polymerization was reached.
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8

Functionalized Nanoparticle-Based Amyloid Detection

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Ethanolamine, gold urchin, nanohorn, 16-mercaptoundecanoic acid, 3-(3-dimethylaminopropyl)carbodiimide (EDC), N-hydroxysulfosuccinimide (sulfo-NHS) and APTMS were received from Sigma Aldrich (USA). Aβ (1–42) was purchased from DgPeptides Co., Ltd, China. Anti- Aβ antibody was obtained from Abcam (England). The aptamer sequence (5′-SH-GCCTGTGTTGGGGCGGGTGCG) was reported by Tsukakoshi et al and synthesized commercially (Apical Scientific, Malaysia).26 (link) Artificial CSF was prepared by mixing 3.0 mM KCl, 150 mM NaCl, 0.8 mM MgCl2·6H2O, 1 mM phosphate and 1.4 mM CaCl2·2H2O.27 (link),28 (link)
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9

Synthesis of Plasmonic-Fluor-800CW Nanostructure

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To prepare plasmonic-fluor-800CW, AuNR (wavelength around 760) was employed as the nanoantenna. 1 μl MPTMS (Sigma Aldrich, 175617) was added to 1 ml AuNR (extinction ~2) and the mixture was shaken on rocking bed for 1 hour. Subsequently, MPTMS-modified AuNR was collected by centrifugation at 6000 rpm for 10 mins and was further mixed with 2 μl APTMS (Sigma Aldrich, 281778) and 2 μl TMPS (Sigma Aldrich, 662275) to form the polymer spacer layer. Finally, AuNR/polymer solution was collected by twice centrifugation at 6000 rpm for 10 minutes to remove the free monomer and concentrated into a final volume of 10 μl.
Next, BSA-biotin-800CW conjugate was coated around AuNR/polymer modified from a previously reported method.48 (link) Specifically, pH of 100 μl 4 mg/ml BSA-biotin-800CW was first lower by adding 1 μl 20 mg/ml citric acid (Alfa Aesar, 36664). Subsequently, concentrated AuNR/polymer solution was added into BSA-biotin-800CW solution and sonicated for 20 minutes under dark condition. The coated nanostructures were then collected by centrifugation at 5000 rpm for 5 minutes and subsequently incubated with 0.5 ml 0.4 mg/ml BSA-biotin-800CW (pH=10) for 3 days in 4°C. Finally, the nanostructures were washed four times using alkaline nanopure water (pH=10) by centrifugation at 6000 rpm and re-dispersed in 1% BSA 1X PBS solution for further use.
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10

Collagen Functionalized PDMS Devices

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The PDMS membrane in the bonded devices was treated with corona treater (ETP, BD-20AC) for 1 min to plasma-activate the surface. Approximately 100 μl of 2% (v/v) (3-aminopropyl)-trimethoxysilane (APTMS) (Sigma, 281778) in 100% ethanol was introduced into the cell culture chamber, and the devices were incubated for 60 min at room temp and washed with distilled water. Meanwhile, 5 mg of CS-DBCO was dissolved in 1 ml of PBS and reacted with 5 mg of EDC for 15 min, followed by 2.1 mg of NHS to convert CS-DBCO into CS-DBCO-NHS ester. The devices were incubated with this activated CS-DBCO-NHS ester at 37°C for overnight to covalently immobilize CS-DBCO on the PDMS surface. The next day, the devices were washed 2–3 times with distilled water, and 10 μg/ml of collagen-azide solution in PBS was introduced into the devices. The devices were incubated overnight to immobilize collagen onto the PDMS surface via a strain-promoted azide–alkyne cycloaddition (SPAAC) reaction between the azide group of collagen zide and the DBCO group of surface-bound CS-DBCO. The devices were washed with PBS before culturing cells.
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