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26 protocols using rabbit anti mouse secondary antibody

1

Protein Expression Analysis in LM3 and HepG2 Cells

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LM3 and HepG2 cells were solubilized in cold radioimmunoprecipitation assay (RIPA) lysis buffer (Thermo Fisher Scientific) to extract protein, which was separated with 10% SDS-PAGE (Pierce, Rockford, IL, USA) and transferred onto a polyvinylidene difluoride (PVDF) membrane (Thermo Fisher Scientific). The PVDF membrane was incubated with mouse anti-human IGF-1R monoclonal antibody (1:100, Abcam, Cambridge, UK) or mouse anti-human GAPDH monoclonal antibody (1:100, Abcam) at 4°C overnight. After washing with PBS containing 0.6% Triton-X 100 (PBST) for 15 minutes, the PVDF membrane was incubated with the rabbit anti-mouse secondary antibody (1:1,000, Abcam) at room temperature for 1 hour. Chemiluminescent detection was conducted by using the ECL kit (Pierce). The protein expression was analyzed using Image-Pro plus software 6.0, represented as the density ratio versus GAPDH.
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2

Aorta Immunohistochemical Analysis

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After a 30-min blocking with BSA, slices of the aorta were treated at 4 °C for an entire night with mouse monoclonal anti-Sirt6 (ab191385, 1:100; Abcam), α-smooth muscle actin (SMA) (GB13044, 1:200; Servicebio), and anti-CD68 (GB11067, 1:100; Servicebio). Thereafter, rabbit anti-mouse secondary antibody (1:1,000; Abcam) was used to stain the sections for 1 h at room temperature (RT) before rinsing and mounting them with a medium containing 4,6-diamidino-2-phenylindole (DAPI). Haematoxylin was used to stain the nucleus. Subsequently, an upright fluorescent microscope and an Olympus FV1000 laser confocal microscope were used for the purpose of visualising the sections.
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3

Immunosuppressive Factors in Cancer

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RPMI-1640 medium, foetal bovine serum, supplements as well as basic laboratory chemicals were purchased from Sigma (Suffolk, UK). Maxisorp™ microtitre plates were obtained from Nunc (Roskilde, Denmark) and Oxley Hughes Ltd (London, UK). Mouse monoclonal antibodies directed against HIF-1α, mTOR and β-actin, as well as rabbit polyclonal Antibodies against phospho-S2448 mTOR, RAGE and HRP-labelled rabbit anti-mouse secondary antibody were purchased from Abcam (Cambridge, UK). Antibodies against phospho-S65 and non-phosphorylated (total) eukaryotic initiation factor 4E binding protein 1 (eIF4E-BP1) were obtained from Cell Signaling Technology (Danvers, MA USA). Goat anti-mouse and goat anti-rabbit fluorescence dye-labelled antibodies were obtained from LI-COR (Lincoln, Nebraska USA). ELISA-based assay kits for the detection of TNFα, IL-1β, SCF and VEGF were purchased from Bio-Techne (R&D Systems, Abingdon, UK). Anti-Tim-3 mouse monoclonal antibody, its single chain variant as well as human Ig-like V-type domain of Tim-3 (amino acid residues 22–124) and human HMGB1 expressed and purified from E. coli (see below for more details) were used in our experiments.11 (link),15 (link) All other chemicals purchased were of the highest grade of purity commercially available.
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4

Regulation of Glucose Metabolism by miR-33a-5p

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Glucose-Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum (FBS), Trizol reagent, miRNA reverse transcription kit, and Lipofectamine 2000 were purchased from Life Technologies (Waltham, MA). BCA protein assay kits were purchased from Beyotime (Haimen, China). Pre-miR-33a-5p lentivirus plasmid, anti-miR-5p lentivirus plasmid, HIF-1α overexpressing plasmid, and HIF-1α shRNA plasmid were purchased from DingGuoChangShengBiotech (Beijing, China). Sequences of the insert in plasmids were listed in Supplementary Table 1. miRNA qRT-PCR Detection Kit was purchased from GeneCopoeia, Rockville, MD, USA. RevertAid H Minus First Strand cDNA Synthesis Kit was purchased from Fermentas. MTT was purchased from Biosharp (Hefei, Anhui, China). The Power SYBR Green kit was purchased from TOYOBO (Osaka, Japan). The glucose assay kit, lactate assay kit, and LDH activity assay kit were from Biovision (Milpitas, CA). The ATP assay Kit was from Beyotime Biotechnology (Shanghai). Mouse anti-HIF-1α monoclonal antibody, mouse anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) monoclonal antibody, and rabbit anti-mouse secondary antibody were purchased from Abcam (Cambridge, UK) and anti-lactate dehydrogenase A (LDH-A) antibody was from Epitomics (Burlingame, CA).
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5

IGF-1R Protein Detection and Quantification

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Cells were solubilized in cold radioimmunoprecipitation lysis buffer (Thermo Fisher Scientific, Inc.). The protein was extracted by centrifugation at 12,000 × g for 20 min at 4°C. The concentration of protein was determined using BCA Protein Assay kit (Pierce; Thermo Fisher Scientific, Inc.). Proteins (50 µg/lane) were separated by 10% SDS-PAGE and subsequently transferred onto a polyvinylidene difluoride membrane (Thermo Fisher Scientific, Inc.). The membrane was incubated with PBS containing 5% milk overnight at 4°C, which was then incubated with mouse anti-IGF-1R (1:200) and mouse anti-GAPDH (1:100, cat. no. ab8245, Abcam) monoclonal antibodies at room temperature for 3 h. After three washes with PBS, the membrane was incubated with a rabbit anti-mouse secondary antibody (1:10,000, cat. no. ab6728, Abcam) at room temperature for 1 h. Chemiluminescent detection was conducted using an Enhanced Chemiluminescence kit (Pierce; Thermo Fisher Scientific, Inc.), according to the manufacturer's protocol.
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6

Allergy Induction and Evaluation Protocol

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The OVA antigen was purchased from Sigma (A8040, USA) and aluminum hydroxide as adjuvant was from Kelong chemical factory (lot number 201110328, Chengdu, Sichuan, China). Enzyme-linked immunosorbent assay (ELISA) kits, specific for IgE (sIgE), interleukin 4 (IL-4), interferon-γ (IFN-γ), TNF-α, and IL-6 were purchased from Abcam (England). Antibodies against SP, GFAP, and CD11b (OX42) and rabbit anti-mouse secondary antibody were also purchased from Abcam, England. Where mentioned, biotin-conjugated rat anti-mouse antibodies were purchased from BD Pharmingen, Beijing, China. Sodium citrate buffer (0.01 M, pH 6.0) was prepared for dilution, where needed. The microscopic image acquisition and analysis system were, respectively, from BA200 Digital and Image-Pro Plus 6.0 (Media Cybernetics, USA).
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7

Quantitative Western Blot Analysis

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Western blot assay was performed to determine the protein expression levels in each group. The cells were lysed in cold radioimmunoprecipitation assay buffer (Invitrogen Life Technologies, Carlsbad, CA, USA). A BCA Protein Assay kit (Thermo Fisher Scientific, Waltham, MA, USA) was used to determine the protein concentrations, according to the manufacturer’s instruction. Subsequently, the proteins were separated on a 10% sodium dodecyl sulphate-polyacrylamide gel and transferred to a polyvinylidene fluoride (PVDF) membrane. The PVDF membrane was blocked with 5% fat dry milk in PBS for 4 h. Subsequently, the PVDF membrane was incubated with specific primary antibodies (mouse anti-cyclin D1, mouse anti-PCNA, mouse anti-CDK4, mouse anti-smooth muscle-α-actin, mouse anti-smoothelin, mouse anti-desmin, mouse anti-phospho-Akt, mouse-anti-Akt, anti-phospho-ERK, mouse-anti-ERK, and mouse anti-glyceraldehyde 3-phosphate dehydrogenase antibodies; all from Abcam, Cambridge, UK) for 3 h. After washing three times with PBS (5 min each time), the PVDF membrane was incubated with a rabbit anti-mouse secondary antibody (Abcam). Next, after washing three times with PBS (5 min each time), an enhanced chemiluminescence western blotting kit (Thermo Fisher Scientific) was used to detect the immune complexes present on the PVDF membrane.
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8

Immunofluorescent detection of CD31

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All the sections were blocked with 1% goat serum albumin for 1 h and then incubated with mouse monoclonal anti-CD31 primary antibody (Ab955, 1:200; Abcam) at 4 °C overnight. The sections were then stained with rabbit anti-mouse secondary antibody (1:1000; Abcam) for 1 h at room temperature. The tissue slices were washed and mounted with medium containing DAPI. All slices were observed by the Olympus FV1000 laser confocal microscope.
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9

Quantification of Angiogenic and ECM Proteins

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Cells were lysed in cold RIPA buffer (Life Technologies). The BCA Protein Assay Kit (Life Technologies) was used to determine the protein concentration. Protein was then separated with 10% SDS-PAGE, and transferred to a PVDF membrane. The PVDF membrane was blocked in 5% nonfat dried milk in PBS for 4 h. After that, the PVDF membrane was incubated with the following primary antibodies for 3 h: rabbit polyclonal anti-COL1A2 (cat no. ab208638; 1:400), mouse monoclonal anti-VEGF-A (cat no. ab155944; 1:100), rabbit polyclonal anti-Notch2 (cat no. ab137665; 1:500), rabbit monoclonal anti-Jagged2 (cat no. ab109627; 1:5000), rabbit monoclonal anti-MMP7 (cat no. ab205525; 1:4000), mouse monoclonal anti-GAPDH antibody (cat no. ab181602; 1:200). All the antibodies were purchased from Abcam, Cambridge, UK. After washing with PBS three times for 5 min, the PVDF membrane was incubated with the rabbit anti-mouse secondary antibody (1:20,000; all antibodies were purchased from Abcam, Cambridge, UK). After washing with PBS three times for 5 min, an ECL Western Blotting Kit (Millipore, Darmstadt, Germany) was used to detect the immune complexes on PVDF membrane.
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10

Quantitative Western Blot Analysis

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Cells were solubilized in cold RIPA lysis buffer (Beyotime). Proteins were separated with 10% SDS-PAGE (Beyotime) and transferred onto a nitrocellulose membrane (Life Technologies), and then incubated with TBST (Beyotime) containing 5% nonfat milk (Yili, Beijing, China) at room temperature for 3 h. The membrane was then incubated with mouse anti-human TGIF2 antibody (Abcam, Cambridge, MA, USA), mouse anti-human MMP9 antibody (Abcam), and mouse anti-human GAPDH antibody (Abcam), respectively, at room temperature for 3 h. After washing three times with PBST, the membrane was incubated with the rabbit anti-mouse secondary antibody (Abcam) at room temperature for 1 h. Detection of immune complex was performed with an Pierce ECL Western Blotting KIT (Pierce, Thermo Fisher, USA), according to the manufacturer’s instruction. Image-Pro plus software 6.0 was used to analyze the expression of the protein.
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