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18 protocols using digital microscope camera

1

Histological Examination of Murine Kidneys

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Mice were anaesthetized via the inhalation of isoflurane and euthanized by cervical dislocation. Kidneys were removed and fixed in 10% formalin. Specimens were embedded in paraffin and sliced into 2–3 μm in thickness. Subsequently, the kidney tissues were stained with Hematoxylin-eosin (H&E stain). The images were captured using a Nikon Digital Camera Microscope (Nikon, Tokyo, Japan).
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2

Immunohistochemistry for Oxidative Stress Markers

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Immunohistochemistry (IHC) was performed manually or automatically with an autostainer (BenchMark XT, Ventana Medical Systems Inc., Tucson, AZ, USA). For the manual protocol, paraffin sections were first deparaffinized and rehydrated in ethanol/water solutions. Epitopes on tissue were then retrieved with Heat-Induced Epitope Retrieval (HIER) in citrate buffer (0.01 M, pH 6.0). For blocking endogenous peroxidase activity, sections were treated with 3% hydrogen peroxide for 30 min in the dark. To reduce non-specific primary antibody binding, Blocking Buffer (DAKO) was used for one hour at room temperature. Sections were then incubated with primary antibodies at 4 °C overnight. Rabbit anti-mouse COX-2, anti-human cPLA2, and anti-8-OHdG polyclonal antibodies were purchased from Santa Cruz Biotechnology (SC-1747-R, SC-7891, and SC-139586, Santa Cruz, CA, USA). Afterward, staining was detected with a DAKO polymer system. For image acquisitions, three random high-power magnification fields were obtained in each sample by a Nikon Digital Camera Microscope (Nikon, Tokyo, Japan). All slides were reviewed by a blinded pathologist (Dr. Shih-Hao Liu), and the area percentage of staining in a 200× power magnification field were analyzed by NIH ImageJ software (Version 1.47, Bethesda, MD, USA).
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3

Quantitative Analysis of Vascular Calcification

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Tissue sections of human arterial rings were evaluated quantitatively and qualitatively. The histological characterizations were assessed by hematoxylin and eosin stain. A Nikon Digital Camera Microscope (Nikon, Tokyo, Japan) was used for image capture. For tissue staining of arterial ring sections, we generally followed the introductions of the manufaculturer’s protocol: (1) von Kossa staining (CVK-1-IFU, ScyTek Laboratories, Logan, UT, USA.) to detect calcified lesions; (2) 8-hydroxy-2’-deoxyguanosine (8-OHdG) (Bs-1278R, Bioss Antibodies, Woburn, MA, USA. 1:200 dilution) for oxidative stress related vascular injury; (3) RUNX2 (Sc-101145, Biotechnology, Santa Cruz, CA, USA. 1:200 dilution) as an osteoblast-specific transcription factor; (4) ALP (Ab108337, Abcam, Cambridge, UK. 1:200 dilution) as a bone formation marker. The details of the quantitative method for IHC images were proposed previously [3 (link)]. In brief, three random high-resolution fields in each specimen were used for quantitative analyses via ImageJ version 1.48v image analysis software (National Institutes of Health, Bethesda, MD, USA).
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4

Histological Examination of Murine Kidneys

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Mice were anaesthetized via the inhalation of isoflurane and euthanized by cervical dislocation. Kidneys were removed and fixed in 10% formalin. Specimens were embedded in paraffin and sliced into 2–3 μm in thickness. Subsequently, the kidney tissues were stained with Hematoxylin-eosin (H&E stain). The images were captured using a Nikon Digital Camera Microscope (Nikon, Tokyo, Japan).
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5

Matrigel-based Angiogenesis Assay

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Overnight, Matrigel was frozen at 4°C. 100 L of Matrigel was applied to the sample solution in a petri plate that had already been refrigerated. It was then incubated at 37°C for 45 minutes. HUVECs (4 by 104 cells) were added in 1 mL of Dulbecco's modified eagle medium (Gibco) with varied ES product doses. An inverted Nikon digital camera microscope was used to monitor endothelial cell tube development after a 12‐hour incubation at 37°C and 5% CO2. Inhibitory activity was reported as a percentage of control (untreated wells = 100%) after manually counting 50 tube formations.
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6

Histopathological Liver Examination Protocol

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Histopathological examination was conducted using fresh liver sections fixed in 4% paraformaldehyde and dehydrated using ethanol solutions. Following embedding in paraffin, the sections were cut into 5 μm thick sections and the photos were taken with a digital camera microscope (Nikon, Tokyo, Japan) after the sections were stained with hematoxylin and eosin.
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7

Immunohistochemical Analysis of Ki67 Expression

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The tissue sections were deparaffinized, rehydrated using a graded ethanol series and heated in citrate buffer for antigen retrieval. Then, the sections were washed, blocked and incubated with normal goat serum. Then, the samples were incubated with a primary antibody anti-Ki67 (ab15580; 1:500; Abcam) at 4°C overnight and secondary antibody (ab205718; 1:5000; Abcam). The sections were stained with diaminobenzidine (DAB) and then counterstained with hematoxylin, dehydrated and mounted. At last, the section was photographed using a digital microscope camera (Nikon, Tokyo, Japan).
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8

Immunohistochemical Analysis of Liver Cytochrome Enzymes

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Liver tissues were fixed with 4% paraformaldehyde solution, embedded in paraffin blocks and processed by immunohistochemistry staining. Tissue sections were deparaffinized and rehydrated using a graded ethanol series and distilled water, and then treated with 3% H2O2 in methanol for 30 min to block endogenous peroxidase activity. Tissue sections were then rinsed twice for five minutes in phosphate-buffered saline (PBS) and incubated with 10% normal goat serum for 30 min to block non-specific antibody binding. After washing, the samples were incubated with primary antibodies against CYP7A1 (Abcam, ab234982, 1:500), CYP8B1 (Abcam, ab175843, 1:50), CYP27A1 (Abcam, ab126785, 1:250), and CYP7B1 (Abcam, ab175889, 1:100). Sections were then washed in PBS three times and incubated with secondary antibodies. The sections were stained with DAB according to the manufacturer’s protocol, mounted on slides, and photographed using a digital microscope camera (Nikon, Tokyo, Japan). The immunohistochemistry sample images were quantified using Image-Pro Plus software (Media Cybernetics, MD, USA).
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9

Quantitative Collagen Fiber Analysis

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After deparaffinization and rehydration, paraffin sections were stained with Sirius red to evaluate collagen fibers according to manufacture’s instruction (Solarbio, G1470), and were calculated as a percentage of the total area. The images of Sirius red-stained sections were obtained with a digital microscope camera (Nikon, Tokyo, Japan), and quantitative evaluation was performed using Image-Pro Plus software (Media Cybernetics Co., Ltd).
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10

Immunohistochemical Analysis of YAP1 and Multitarget Staining

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After deparaffinization and rehydration process of tissue sections, the endogenous peroxidase activity was blocked by a 30-minute treatment with 1% H2O2 in methanol. Then the tissue sections were rinsed twice in phosphate-buffered saline for 5 m each, followed by blocking with 10% normal goat serum. After rinsing, the samples were incubated with a primary anti-YAP1 (#4912; Cell Signaling Technology, Danvers, MA, USA), anti-YAP1 (s127) (#13008, Cell Signaling Technology). Then the sections were incubated with secondary antibodies, followed by staining with 3,3′-diaminobenzidine based on the manufacturer′s protocol. The sections were then mounted on slides, and photographed with a digital microscope camera (Nikon, Tokyo, Japan). Multiple color staining was performed with Opal 4-anti-rabbit automation IHC kits (NEL830001KT, AKOYA science) following the manufacturer’s instructions. The sections were incubated overnight with primary antibodies to AXL (#8661; Cell Signaling Technology), HBx (ab203540; Abcam) and HBc (ab8637; Abcam) at 4°C. Subsequently, photographs were obtained with a digital microscope camera (Nikon).
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