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9 protocols using p smad2

1

Protein expression analysis by Western blot

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Cells and tissues were lysed by RIPA buffer and separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Proteins were transferred to nitrocellulose membranes (Pierce, Rockford, IL, USA). The membranes were blocked with 5% nonfat dry milk in TBST. Primary antibodies were: SMAD7 (MAB2029, R&D Systems, Minneapolis, MN, USA), P21 (SAB4500065, Sigma Aldrich), pSMAD2 (Ser465/467), pSMAD1/3, BCL-2, BCL-XL, pSTAT3, pJNK, pc-JUN, MCL-1, cleaved caspase-3 and Actin (3101, 9520,2870, 2762, 9145, 4668, 3270,5453,9661 and 3700, Cell Signaling Technology), c-MYC, pIκBα, IL-6, TGF-β1, pERK, CyclinD1, pP38 and VEGF (sc-40, sc-1265, sc-8404, sc-130348, sc-13073, sc-753, sc-7973, and sc-507, Santa Cruz Biotechnology). Secondary antibodies were: horseradish peroxidase-linked anti-rabbit and anti-mouse antibodies (Santa Cruz Biotechnology). The membranes were developed using Supersignal Ultra (Pierce).
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2

Protein Extraction and Western Blot Analysis

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Total protein from LX-2 were extracted using RIPA Lysis Buffer (Beijing Biomed) and the protease inhibitor PMSF, and the nuclear proteins were extracted using the Nucleoprotein Extraction Kit (Sangon Biotech, Shanghai). Cell lysates were separated using SDS–PAGE and transferred to Immobilon-P membranes (Millipore). Membranes were incubated with primary antibodies for AMPK (Cell Signaling Technology), pAMPK (Cell Signaling Technology), pSTAT3 (Cell Signaling Technology), pAkt (Cell Signaling Technology), p-mTOR (Cell Signaling Technology), p-SMAD2 (Sigma-Aldrich), and GAPDH (Santa Cruz Biotechnology) followed by HRP-conjugated secondary antibodies (1:2,000; Sungene Biotech Co., Ltd) that were specific to the species of the primary antibodies.
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3

Fibrosis Pathway Regulation Protocol

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Sch C, purity: 99.76%, Chengdu Pufei De Biotech Co., Ltd., Chengdu, China; BLM, Nippon Kayaku Co., Ltd. Japan; JNK inhibitor (SP600125), Selleck China Inc. (Shanghai, China); TGF-β1, Sigma-Aldrich Inc. (Shanghai, China); The primary anti bodies are both from Abclonal: anti-α-SMA, anti-FN, anti-Collagen type I (Col 1A1), anti-Collagen type III (Col 3A1), anti-LOX, anti-TGF-β1, anti-Smad2, anti-Smad3, anti-phosphorylation-Smad2 (p-Smad2), anti-phosphorylation-Smad3 (p-Smad3), anti-JNK, anti-phosphorylation-JNK (p-JNK), anti-MMP2, anti-MMP9, anti-TIMP1, and anti-β-actin. The dilution ratio of all antibodies was 1:1000.
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4

Multimodal Tissue Characterization

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Tissues were collected and fixed in paraformaldehyde 4%. Paraffin sections were treated with xylene, ethanol 100%, ethanol 90%, and ethanol 70% baths. Permeabilization was done in Triton 0.1%. Antigen retrieval was done in citrate buffer (ThermoFisher). Primary antibodies were Acta2 (Sigma-Aldrich), CD31 (R&D Systems), collagen-I (Abcam), eNOS (BD Biosciences), GFP (Abcam), laminin (Sigma-Aldrich), pSmad2 (Millipore), TGFβ (R&D Systems), VEGFR2 (Cell Signaling), and PV1 (Novus Biologicals). Pictures were taken using an SP5 confocal microscope (Leica).
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5

Muscle Progenitor Cell Protein Analysis

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Human or mouse primary muscle progenitor cells were lysed in RIPA buffer (50 mM Tris, 150 mM NaCl, 1% NP40, 0.25% sodium deoxycholate and 1 mM EDTA, pH 7.4) containing 1X protease inhibitor (Roche), 1 mM Phenylmethylsulfonyl fluoride (PMSF), 1 mM sodium fluoride and 1 mM sodium orthovanadate. Cell lysates were resuspended in 1X Laemmli buffer (Bio-Rad), boiled for 5 minutes and separated on precast 7.5% or 4-15% TGX gels (Biorad). Primary antibodies were diluted in 5% non-fat milk in TBS + 0.1% Tween-20, and nitrocellulose membranes were incubated with antibody mixtures overnight at 4 °C. HRP-conjugated secondary antibodies (Santa Cruz Biotech) were diluted 1:1,000 in 5% non-fat milk in TBS + 0.1% Tween-20 and incubated for 1 hour at room temperature. Blots were developed using Western Lightning ECL reagent (Perkin Elmer), and analyzed with Bio-Rad Gel Doc/Chemi Doc Imaging System and Quantity One software. Antibodies for phospho-ERK1/2, ERK1/2, pSmad1,5,8 and β-Actin, pGSK3β Y216, and Total GSK3β, were purchased from Cell Signaling. pSmad3 was purchased from Epitomics. Smad2/3, and Dll1 antibodies were from Santa Cruz Biotechnology. GapDH and Nicd1 antibodies were from Abcam, pSmad2 and β-Catenin were from Millipore.
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6

Immunoblotting Analysis of EMT Markers

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Immunoblotting using whole-cell lysate was done with primary antibodies against α-SMA (1:5000; Sigma), E-cadherin (1:5000; BD Biosciences), vimentin (1:1000; Abcam), fibronectin (1:2500; Abcam), collagen I (1:2000; Abcam), Smad3 (1:2500; Cell signaling technology, Danvers, MA, USA), and phosphorylated Smad3 (p-Smad3; 1:2500; Cell signaling technology), Smad2 (1:2500; BD Biosciences), and phosphorylated Smad2 (p-Smad2; 1:2500; Millipore). The sites of the antigen-antibody reaction were detected with horseradish peroxidase conjugated secondary antibodies (P447, diluted 1:10000; Dako, Glostup, Denmark) using an enhanced chemiluminescence (ECL) advanced detection system (GE Healthcare, Little Chalfont, UK). The band densities were quantified by densitometry and compared to the expression of glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Computer analysis of band pixel intensities was performed by Scion Image (Scion, Frederick, MD, USA).
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7

Immunofluorescent Analysis of Bone Tissue

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Sections (5μm thick) were rehydrated and blocked prior to the addition of specific primary antibody (Cleaved Caspase-3, #9964S, Cell Signaling; phospho-Histone H3, #04-1093, Millipore; pSMAD2, #AB3849, Millipore) and appropriate IgG controls. Tissue sections were incubated overnight at 4°C. Subsequently, species-specific secondary AlexaFluor 568 antibodies (1: 1000 dilution for one hour at room temperature; #A10042 and #A21202 Invitrogen) were added for imaging by microscopy. For quantitation of bone volume, mouse tibiae were stained with Trichrome stain. Tartrate-resistant acid phosphatase (TRAcP), a marker of mature osteoclasts, was detected using a colorimetric kit according to the manufacturer’s instructions (Kit 387-A, Sigma-Aldrich). Sections were scanned and quantified using Definiens tissue studio software and Image J.
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8

Western Blot Analysis of p-Smad2 and Smad2

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Cells were homogenized and lysed using RIPA buffer (Amresco) with protease and phosphatase inhibitors (Sigma and Roche, respectively). After centrifugation at 13,000g for 5 min, protein concentrations were measured using the BCA protein assay kit (Pierce) and lysates were separated on a 4–12% Bis–Tris gels (Invitrogen) using MOPS sodium dodecyl sulfate running buffer (Invitrogen). Proteins were transferred with the iBlot system onto nitrocellulose membranes (Novex) and incubated with antibodies p-Smad2 (1:1000, Millipore) and Smad2 (1:1000, Cell Signaling Technology). Signal intensities were detected using ECL Western blotting detection reagents (Amersham Biosciences) and evaluated by ImageJ.
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9

Immunohistochemical Analysis of Lung Development

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Tissues were fixed in 4% paraformaldehyde overnight and subject to paraffin sectioning. Immunohistochemistry was performed by using the following antibodies and concentrations: Hdac3 (Santa Cruz Biotechnology, 1:10), Nkx2.1 (Santa Cruz, 1:50), p-Smad2 (Millipore, 1:1000), Sox2 (Seven Hills, 1:500), Sox9 (Santa Cruz, 1:100), Sftpc (Santa Cruz, 1:50), Sftpb (Chemicon, 1:100), Aqp5 (Abcam, 1:100), Pdpn (Hybridoma Bank, 1:50), Scgb1a1 (Santa Cruz, 1:20), TubbIV (BioGenex, 1:20), Pdgfrα (Cell Signaling, 1:25), Pecam (Pharmingen, 1:500), Col4a3 (Santa Cruz, 1:50), RAGE (R&D Systems, 1:50) c-Caspase 3 (Cell Signaling, 1:50), BrdU (Abcam, 1:100), and phospho-histone H3 (Cell Signaling, 1:200). Whole-mount staining was performed as previously described (Metzger et al., 2008 (link)).
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