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8 protocols using ketoconazole

1

CYP3A4 Inhibition Assay with Ketoconazole

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Ketoconazole (Tokyo Chemical Industry, Tokyo, Japan) was used as an inhibitor against CYP3A4 and changes in metabolic activity were measured using a P450-Glo assay with luciferin-IPA. Cells were seeded in a 48-well collagen-coated plate at 2.5 × 104 cells/well, and the medium was changed after 2 d. The next day, the medium was collected, cells were washed twice with PBS, and then 100 μL of TM (pH 6.5) containing Ketoconazole (Tokyo Chemical Industry) at 0, 0.01, 0.1, 1.0, 10, and 100 μM was added to each set of three wells. TM was adjusted to pH 6.5 by adding 4.2 mM NaHCO3, 20 mM glucose, and 10 mM MES to HBSS. The cells were preincubated for 1 h at 37 °C and 1000-fold diluted CYP3A4 substrate was added. One hour later, 50 μL of the supernatant was collected from the well, mixed with 50 μL of detection reagent, and the luminescence value was measured using an Infinite F500 plate reader (Wako).
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2

Quantification of RPG and QCT in Plasma

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RPG (purity > 98%), QCT (purity ≥ 95%), and ketoconazole (used as an internal standard; purity ≥ 98%) were purchased from Tokyo Chemical Industry Co. (Tokyo, Japan) Ethanol, dimethyl sulfoxide, polyethylene glycol 400 (PEG 400), carboxymethyl cellulose (CMC), potassium phosphate monobasic/dibasic, β-Nicotinamide adenine dinucleotide phosphate (NADPH), and phosphate-buffered saline (PBS) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Pooled male Sprague-Dawley rat plasma and pooled male human plasma were purchased from Innovative Research, Inc. (Novi, MI, USA) Pooled HLM and RLM were purchased from BD-Genetech (Woburn, MA, USA).
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3

HPLC Analysis of Plant Polyphenols

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Chromatographic grade acetonitrile was purchased from Avantor Performance Materials, Inc. (Center Valley, PA, USA). Chromatographic grade methanol was purchased from Tianjin Shield Fine Chemicals Co., Ltd. (Tianjin, China) Analytical grade glacial acetic acid was purchased from Tianjin Fuyu Fine Chemical Co., Ltd. (Tianjin, China) The water was Wahaha pure water. Coomassie brilliant blue was purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). The isoquercitrin, astragalin, quercetin and kaempferol with purity greater than 98% were purchased from Chengdu Pufei De Biotech Co., Ltd. (Sichuan, China). The 4-nitrocatechol and 4-nitrophenol were purchased from A Johnson Matthey Company (Royston, UK). Phenacetin and 6β-Hydroxytestosterone and clomethiazolewere purchased from Sigma (St. Louis, MO, USA). Testosterone was purchased from Beijing J & K Technology Co., Ltd. (Beijing, China). NADPH was purchased from Blue Chemical Technology Co., Ltd. (Shanghai, China). Ketoconazole was purchased from Tokyo Chemical Industry (Tokyo, Japan).
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4

Quantification of CEL and REP

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CEL (purity ≥98%), ketoconazole (as internal standard [IS]; purity ≥98%), as shown in Figure 1, and REP (purity >98%) were purchased from Tokyo Chemical Industry Co. (Tokyo, Japan). DMSO, ethanol, potassium phosphate monobasic/dibasic, and polyethylene glycol 400 were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). β-nicotinamide adenine dinucleotide phosphate (NADPH), HLM, and RLM were purchased from BD-Genetech (Woburn, MA, USA). ACN and methanol of HPLC grade were purchased from Thermo Fisher Scientific, Inc. (Waltham, MA, USA).
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5

Yeast Genetic Manipulation Protocols

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Yeast media were prepared as described in Adams et al. (1997) . Gene disruptions were performed as detailed in Sikorski and Hieter (1989) (link) and Taxis and Knop (2006) (link). Strains were cultured at 30° except where otherwise indicated. The genotypes of strains used in the course of this study, along with construction details, are provided in Supporting Information, Table S1. Oligonucleotides used during this study are listed in Table S2. Ethidium bromide (Thermo-Fisher Scientific, Waltham, MA) was used at a concentration of 25 µg/mL to destroy mtDNA. Cycloheximide (CHX; Sigma-Aldrich, St. Louis, MO) was used at a concentration of 10 µg/mL for plasmid counterselection on yeast extract peptone dextrose broth (YEPD) medium, 3 µg/mL for plasmid counterselection on yeast extract peptone 3% glycerol+3% ethanol (YEPGE) medium, and at 0.2 µg/mL in YEPD medium to test for activation of the PDR pathway. Ketoconazole (Tokyo Chemical Industry Co., Tokyo, Japan), another PDR substrate, was used at a concentration of 2 µg/mL in YEPD. To disrupt the actin cytoskeleton in logarithmic-phase cultures, latrunculin A (Santa Cruz Biotechnology, Dallas, TX) was used at a concentration of 10 µM in SD medium lacking leucine (SD-Leu), following the procedure of Hammermeister et al. (2010) (link). Serial dilution assays were performed as in Garipler et al. (2014) (link).
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6

Lipid Metabolic Pathway Reagent Procurement

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Tung oil and standard CLA oil were obtained from the Nisshin OilliO Group, Ltd. NADPH, NADP + , NADH, and NAD + were purchased from Oriental Yeast Co., Ltd. (Tokyo, Japan) . Trimethylsilyldiazomethane (TMSN 2 CH 3 ) , trimethylolaminomethane acetate (Tris-actate) , fluvoxamine, ticlopidine, montelukast, fluconazole, chlormethiazole, and ketoconazole were purchased from Tokyo Chemical Industry (Tokyo, Japan) . Indomethacin, niflumic acid, 2-chloroethyl ethyl sulfide (CEES) , 17-octadecynoic acid (17-ODYA) , and HET0016 were purchased from Sigma-Aldrich (St. Louis, MO) . Lauric acid, palmitic acid, stearic acid, oleic acid, linoleic acid, linolenic acid, arachidonic acid, prostaglandin A1, sulfaphenazole, and quinidine were obtained from Cayman Chemical Company (Ann Arbor, MI) . All other chemicals (sucrose, EDTA・2Na・2H 2 O, DTT, PMSF) were purchased from Wako Pure Chemical Industries, Ltd.
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7

Rat Microsomal Metabolism Assay

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Acacetin (purity > 98%) and ketoconazole (KCZ) were purchased from Tokyo Chemical Industry Co. (Tokyo, Japan). Chlorpropamide (purity > 97%), quinidine (QND), sulfaphenazole (SPZ), α-naphthoflavone (NF), phosphate-buffered saline (PBS), dimethyl sulfoxide (DMSO), and polyethylene glycol 400 (PEG 400) were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Nicotinamide adenine dinucleotide phosphate (NADPH), uridine diphosphate glucuronic acid (UDPGA), and rat liver microsomes (RLM; from male Sprague-Dawley rats) were purchased from Corning, Inc. (Midland, NC, USA). Pooled plasma (from male Sprague-Dawley rats) was purchased from Innovative Research, Inc. (Novi, MI, USA). The protocol for the animal studies conducted in this report was approved by the Institutional Animal Care and Use Committee at Pusan National University (approval no. PNU-2019-2217, date of approval: 17 April 2019). Eight-week-old male Sprague-Dawley rats weighing approximately 250 g were purchased from DBL Co. (Chungcheongbuk-do, Korea). The rats were housed and acclimatized before use, as reported previously [22 (link)].
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8

Dabigatran Etexilate Pharmacokinetics Analysis

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All materials used in this study were the highest grade available commercially.
Dabigatran etexilate (DABE), desethyl dabigatran etexilate (BIBR1087), dabigatran ethylester (BIBR0951), and dabigatran (DAB) were purchased from Toronto Research Chemical Inc. (Ontario, Canada). Acetonitrile was purchased from Honeywell Burdick and Jackson (Fischer Scientific, MI, USA). β-Nicotinamide adenine dinucleotide phosphate tetrasodium salt (NADPH), ketoconazole (KTZ), labetalol hydrochloride, and formic acid were purchased from Tokyo Chemical Industry Co., Ltd. (Chuo-ku, Tokyo, Japan). Bis(4nitrophenyl) phosphate (BNPP) was purchased from Sigma Aldrich (St. Louis, MO, USA).
Pooled human liver microsomes (HLM) were purchased from Gibco Life Technologies (Thermo Fischer Scientific Inc., MA, USA). Recombinant human CYP3A4 and CYP3A5 with oxidoreductase and cytochrome b 5 (Corning ® Supersome TM ) and pooled human intestinal microsome (HIM) were purchased from Corning Incorporated (NY, USA).
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