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11 protocols using ril 7

1

Profiling IL-33-Activated Innate Lymphoid and T Cells

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Foxp3eGFP reporter mice were treated with 100 ng of rmIL-33 (R&D Systems) i.n. every 3 days for 2–3 weeks. Lin CD45+CD90+CD25+IL-33R+ ILC2s and/or CD45+CD3+CD5+CD4+Foxp3IL-33R+ TH2 cells were sort-purified from the lung and rested for 18 h in DMEM Complete Media (Dulbecco’s modified Eagle’s medium with 10% fetal bovine serum (Denville Scientific), 1% l-glutamine (GIBCO), 1% penicillin/streptomycin (GIBCO), 25 mm HEPES buffer, and 55 μm 2-β-mercaptoethanol (Sigma-Aldrich)) on ice. For Arg1 inhibitor studies only, cells were then cultured for additional 24 hin DMEM Complete Media with 20 ng/ml rIL-2, 20 ng/ml rIL-7 and 50 ng/ml rIL-33 (all cytokines from R&D Systems) at 37°C. Cells were plated at 200,000 cells per well and OCR and ECAR measured in XF media (non-buffered RPMI 1640 containing 25 mM glucose, 2 mM l-glutamine, and 1 mM sodium pyruvate) under basal conditions, in response to 1 μM oligomycin, 1.5 μM fluoro-carbonyl cyanicide phenylhydrazone (FCCP) and 100 nM rotenone + 1 μM antimycin A (Sigma-Aldrich) and as indicated after DMSO or 500 μM nor-NOHA injection using a 96 well Extracellular Flux Analyzer (Seahorse Bioscience).
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2

Culturing Lung and Skin ILC2s

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LinCD45+Thy1+Red5+ ILC2s from lung and skin were FACS sorted and 2500 (lung) or 1000 (skin) cells per well were cultured in RPMI-1640 (Sigma) containing 10% FBS, 10 mM HEPES (Sigma), 100 μM non-essential amino acids (Sigma), 1 mM sodium pyruvate (Gibco), 100 μU/mL penicillin (Gibco), 100 μg/mL streptomycin (Gibco), 50 μM 2-mercaptoethanol (Gibco), 10 ng/ml rIL-7 (R&D Systems), 10 ng/ml rIL-2 (R&D Systems), and 10 ng/ml rIL-33 (BioLegend) in 96-well round bottom plates at 37 °C under 5% CO2. After 3 days, supernatants were collected and the concentration of CXCL2 was measured by ELISA (ThermoFisher, EMCXCL2).
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3

Expansion and Stimulation of ILC2s from Murine Models

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Wt and Pla2g5-null mice received four doses of 25ug of Alternaria in 20ul of PBS i.n. on day 0, 3, 6 and 9 and euthanized 18h later in order to expand ILC2s prior to FACs sorting. Sorting of ILC2s (CD45+ Lin− (CD3, CD19, Ly6g, CD11c, CD11b, Nk1.1, FcεR1), Thy1.2+) was performed using a FACSDiva 8.0.1 cell sorter (BD Bioscience). Purified CD45+ lin-Thy1.2+ cells (>98%) were rested for 40h with 10ng/mL rIL-2 and rIL-7 (R&D Systems, Minneapolis, MN) in 96 well around bottom plates (20000 cells per well). Prior to stimulation, the medium was changed to fresh medium. ILC2s were cultured with 30ng/mL rIL-33 (R&D Systems), 200 μM LinOleic Acid (Cayman Chemical) or 200 μM Oleic Acid (Cayman Chemical)22 (link) or all together for 8h. For intracellular cytokine staining, 1 μl/mL of Golgi Plug (BD Bioscience) was added to ILC2s 6h before collection for FACs analysis.
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4

Isolation and Culture of Murine γδ T Cells

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γδ T cells were sorted from pLNs. CD4+, CD8+ and CD19+ cells were depleted using Dynabeads (Invitrogen) before a negative sorting using Aria III cytometer (BD Biosciences). Highly purity of γδ T cells with untouched TCR was obtained. γδ T cells were cultured in RPMI 1640+Glutamax (Gibco) with 10% FCS, 100 U ml-1 penicillin and streptomycin, 10 mM HEPES, 1 mM sodium pyruvate, non-essential amino acids, 50 μM 2-mercaptoethanol in 96 well plates at 37°C, 5% CO2. When indicated 15–30 U ml-1 of rIL-2 and 15 μg ml-1 rIL-7 (R&D Systems) were used. Cells were cultured on plate-bound with 0.1 μg ml-1 anti-CD3ε (145-2C11) and 10 μg ml-1 anti-CD28 (37.51) (both from eBioscience).
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5

ILC transfer to study C. rodentium

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ILCs (CD3CD19CD11cNK1.1CD90+CD127+CD25+) were sort purified from the spleen, PPs, and mLNs of naive IKKαF/F, C57BL/6 WT, or C57BL/6 Il22−/− mice using a FACSAria III sorter (BD). T cells (CD3+CD90+) were simultaneously sorted as a control cell population. Sorted ILCs and T cells were incubated for 1 h at 37°C with 10 ng/ml rIL-7, 10 ng/ml rIL-2, 10 ng/ml rIL-23, and 10 ng/ml rIL-1β (R&D Systems) to support cell viability and optimal IL-22 production before i.v. transfer into recipient IKKαΔIEC or IKKαF/F mice on days 0, 2, 4, and 7 after C. rodentium infection.
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6

Antigen-Specific T-Cell Activation Assay

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Peripheral blood mononuclear cells (PBMCs) were prepared in RPMI 1640 medium containing 10% fetal calf serum (FCS) (RPMI 1640/FCS, Invitrogen Ltd.) as described previously [33 (link)]. PBMCs (0.5 × 105) in 200 μl of RPMI 1640/FCS were added to each well of a 96-well round-bottomed plate and incubated for 8–10 days with 10 μmol of one of the following: Sp17(1), Sp17(2), Sp17(3), Sp17(4), Sp17(5), Sp17(6), or the control HIV peptides, 10 μg/ml phytohaemagglutinin (PHA; Sigma-Aldrich Co. Ltd., Dorset, UK), or tissue culture media only. Recombinant interleukin-2 (rIL-2: 20 iu/ml; Roche Diagnostics, Indianapolis, IN, USA) and rIL-7 (25 ng/ml; R&D Systems, Minneapolis, MN, USA) were added on days 2, 5, and 7.
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7

Expansion and Stimulation of ILC2s from Murine Models

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Wt and Pla2g5-null mice received four doses of 25ug of Alternaria in 20ul of PBS i.n. on day 0, 3, 6 and 9 and euthanized 18h later in order to expand ILC2s prior to FACs sorting. Sorting of ILC2s (CD45+ Lin− (CD3, CD19, Ly6g, CD11c, CD11b, Nk1.1, FcεR1), Thy1.2+) was performed using a FACSDiva 8.0.1 cell sorter (BD Bioscience). Purified CD45+ lin-Thy1.2+ cells (>98%) were rested for 40h with 10ng/mL rIL-2 and rIL-7 (R&D Systems, Minneapolis, MN) in 96 well around bottom plates (20000 cells per well). Prior to stimulation, the medium was changed to fresh medium. ILC2s were cultured with 30ng/mL rIL-33 (R&D Systems), 200 μM LinOleic Acid (Cayman Chemical) or 200 μM Oleic Acid (Cayman Chemical)22 (link) or all together for 8h. For intracellular cytokine staining, 1 μl/mL of Golgi Plug (BD Bioscience) was added to ILC2s 6h before collection for FACs analysis.
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8

Profiling IL-33-Activated Innate Lymphoid and T Cells

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Foxp3eGFP reporter mice were treated with 100 ng of rmIL-33 (R&D Systems) i.n. every 3 days for 2–3 weeks. Lin CD45+CD90+CD25+IL-33R+ ILC2s and/or CD45+CD3+CD5+CD4+Foxp3IL-33R+ TH2 cells were sort-purified from the lung and rested for 18 h in DMEM Complete Media (Dulbecco’s modified Eagle’s medium with 10% fetal bovine serum (Denville Scientific), 1% l-glutamine (GIBCO), 1% penicillin/streptomycin (GIBCO), 25 mm HEPES buffer, and 55 μm 2-β-mercaptoethanol (Sigma-Aldrich)) on ice. For Arg1 inhibitor studies only, cells were then cultured for additional 24 hin DMEM Complete Media with 20 ng/ml rIL-2, 20 ng/ml rIL-7 and 50 ng/ml rIL-33 (all cytokines from R&D Systems) at 37°C. Cells were plated at 200,000 cells per well and OCR and ECAR measured in XF media (non-buffered RPMI 1640 containing 25 mM glucose, 2 mM l-glutamine, and 1 mM sodium pyruvate) under basal conditions, in response to 1 μM oligomycin, 1.5 μM fluoro-carbonyl cyanicide phenylhydrazone (FCCP) and 100 nM rotenone + 1 μM antimycin A (Sigma-Aldrich) and as indicated after DMSO or 500 μM nor-NOHA injection using a 96 well Extracellular Flux Analyzer (Seahorse Bioscience).
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9

Modulating Lymphocyte-hMSC Interactions

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Co-cultures of PHA-stimulated lymphocytes and hMSCs were treated with different concentrations of Indomethacin (5, 25, 50 and 100 ng/mL) in order to verify if the blocking of prostaglandin synthesis would interfere with the anti-proliferative effects of hMSCs. Co-cultures of PHA-stimulated lymphocytes and hMSCs were also treated with different concentrations of polyclonal neutralizing goat anti-human IL-7 antibody (10 and 20 ul) (R&D Systems) or with rIL-7 (10 and 20 ng/mL, R&D systems), in order to verify a possible activity of this cytokine on the anti-apoptotic effect of hMSCs on lymphocytes.
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10

Proteomic Analysis of Pre-B Cells

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B cells were enriched from total BM from Fnip1−/− and Fnip1+/+ littermates. Pre- and pro-B cells were enriched via positive selection with α-CD19 Ab-conjugated magnetic beads (EasySep, Stemcell Technologies) followed by FACS sorting for IgM negative cells, and were cultured overnight in rIL-7 (R&D systems). 2×106 cells from each replicate were then lysed using 8M Urea. Peptide enrichment and chromatography were performed as previously described. Following peptide quantification (Pierce quantitative fluorometric peptide assay), 1 ug of each sample was analyzed by mass spectrometry as described previously(22 (link)).
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