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7 protocols using cd8a percp

1

Cytokine Profiling of PBMC Responses

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In the ICS assay, we stimulated PBMC of H1, H2, and H3 with CMV (pp65 and IE1) and EBV (EBNA1, LMP1, and BZLF1) and incubated for 6 h in 37°C. For staining, we used FITC (CD4, Cat. no. 317408; BioLegend, RRID:AB_571951), PE (CD107a, Cat. no. 328608; BioLegend, RRID: AB_1186040), PerCP (CD8a, Cat. no. 300922; BioLegend, RRID: AB_1575072), PE-Cy7 (IL2, Cat. no. 500326; BioLegend, RRID: AB_2125593), APC (TNFa, Cat. no. 502912; BioLegend, RRID:AB_315264), APC-Cy7 (IFNg, Cat. no. 502530; BioLegend, RRID: AB_10663412), Pacific Blue (CD3, Cat. no. 300330; BioLegend, RRID:AB_10551436), and LIVE/DEAD Aqua-Amcyan Antigen for staining cells. We employed BD FACSCanto (BD), and the sort logic was set by gating lymphocytes by forward scatter and side scatter and then gating on CD3+ CD4+ cells and CD3+ CD8+ cells. The dataset was analyzed by FlowJo software version.10.
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2

Multicolor Flow Cytometry Immunophenotyping

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Lamina propria lymphocytes were stained with antibodies for 30 min at 4°C. The following anti-mouse antibodies (all from Biolegend) were used: Alexa Fluor 700-CD45 (Clone 30-F11), APC/Cyanine7-F4/80 (BM8), PerCP-CD11b (M1/70), Brilliant Violet 570-Ly6G (1A8), Brilliant Violet 421-CD86 (GL-1), FITC-CD206 (C068C2), PE-Ly6C (HK1.4), PerCP/Cyanine5.5-CD3 (17A2), BV421-CD4 (GK1.5), PerCP-CD8a (53–6.7) and FITC-B220 (RA3-6B2). All data were acquired on the Gallios instrument (Beckman) and analyzed using FlowJo X (TreeStar) or Beckman analysis software.
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3

Comprehensive Immune Cell Profiling

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Antibodies were CD45-PE-Cy7 (leukocyte), CD3-AF647 (T cell), CD4-PE (T helper cell), CD25-BV510 and Foxp3-AF488 (regulatory T cell), CD8a-PerCP (cytotoxic T cell) from Biolegend and CD11b-AF700 (phagocyte), CD68-BV510 (pan-macrophage) from AbD serotec and CCR7-AF647 (M1 macrophage), CD206-FITC (M2a macrophage) from Bioss and CD163-PE (M2c macrophage) from LSBio. Single cell suspensions were first stained for the surface markers CD45, CD11b, CD163, CD206, CCR7 (macrophage panel), or CD45, CD3, CD4, CD25, CD8a (T cell panel). Cells were then stained for intracellular staining (CD68) as previously described16 (link). Data were acquired using Gallios flow cytometer (Beckman Coulter) and fluorescence minus one (FMO) samples were used to set the gates. Evaluation was performed using FlowJo v10 software.
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4

Multiparameter Flow Cytometry Analysis

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Antibodies were CD45-PE-Cy7, CD3-AF647, CD4-PE, CD25-BV510, Foxp3-AF488, CD8a-PerCP from Biolegend and CD11b-AF700, CD68-BV510 from AbD serotec and CCR7-AF647, CD206-FITC from Bioss and CD163-PE from LSBio. Single cell suspensions were first stained with 50 μl antibody mixture for the surface markers CD45, CD11b, CD163, CD206, CCR7 (macrophage panel), or CD45, CD3, CD4, CD25, CD8 (T cell panel), for 30 minutes in room temperature. Cells were then washed once and incubated with Cytofix/Cytoperm for intracellular staining according to the manufacturer’s instructions (BD Biosciences) at 4 °C for 20 min. Fixed and permeabilized samples were stained with intracellular markers CD68 (for macrophage panel) or Foxp3 (for T cell panel) diluted in Perm/Wash buffer for 30 minutes. Cells were then washed 3 times with Perm/Wash buffer before being fixed in 1% paraformaldehyde. Data were acquired using Gallios Flow Cytometer (Beckman Coulter) and fluorescence minus one (FMO) samples was used to set the gates. Evaluation was performed using FlowJo v10 software.
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5

Comprehensive Immune Cell Profiling

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All flow cytometry and analysis was done on an Aria FACS Diva flow cytometer equipped with 3 lasers, and all analysis was done with the FACS Diva software. The following antibodies were used in specific phenotypic panels: T-Cell Panel: CD4-APC-Cy7 (Biolegend, San Diego, CA, USA), CD8a-V450 (BD Horizon San Jose, CA, USA), CD44-FITC (ThermoFisher Scientific, Waltham, MA, USA), CD62L-eFluor660 (eBiosciences, San Diego, CA, USA), KLRG1-Biotin (BD Pharmingen, San Jose, CA, USA) with Streptavadin-Alexa Fluor 430 (ThermoFisher Scientific) as the secondary, and CD127-PE (R&D Systems, Minneapolis, MN, USA). NK Cell Panel: CD56-Alexa Fluor 700 (Novus Biologicals, Littleton, CO, USA), CD314-PE (ThermoFisher Scientific), CD3-FITC, CD161-APC, CD8a-PerCP all from Biolegend. DC Panel: CD11c-FITC (Bio-Rad, Hercules, CA, USA), CD86-PE (Biolegend), and MHC Class II-APC (Miltenyi Biotec, Teterow GER). Treg Panel: FoxP3-PE, CD4-APC and CD25-FITC all from Biolegend. All antibodies were used at the company’s suggested concentration or titrated for optimal use.
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6

Immunohistochemistry and Flow Cytometry Protocol

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ART (purity: 99.83%, Selleck Chemicals, California, USA) was dissolved in DMSO at 100 mM for storage and use. Antibodies used for immunohistochemical staining included anti-CD3 (ab16669,1:800), anti-CD8 (ab217344,1:400), anti-CD68 (ab31630, 1:1600), anti-Foxp3 (ab22510, 1:400; all from Abcam, Cambridge, England), anti-CD4 (Cell Signaling Technology, Shanghai, China; D7D2Z, 1:800), and anti-rat C4d (Hycult Biotech, Uden, Netherlands; HP8034, 1:400). Anti-rat antibodies for flow cytometry were from BioLegend, including CD45-Pacific Blue, CD3-FITC, CD4-APC/Cy7, CD8a-PerCP, and CD11b- PE/Cy7. B220-PE was purchased from Thermo Fisher.
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7

Isolation and Flow Cytometry Analysis of Leukocytes

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Leukocytes from lymph nodes, blood, spleen and peritoneal cavity wash were collected and isolated as described [56 (link)], and analysed by flow cytometry. Anti-mouse CD16/CD32 antibody (1:50, BD Biosciences, clone #2.4G2) was used to block non-specific binding. The following fluorochrome-conjugated antibodies were used: CD3e-AF700 (1:200, BD Biosciences, clone #500A2), CD4-BUV395 (1:100, BD Biosciences, clone #RM4-5), CD8a-PerCP (1:100, BioLegend, clone #53-6.7), CD25-PE-CF594 (1:100, BD Biosciences, #PC-61), FoxP3-APC (1:50, eBioscience, clone #FJK-16S), CD11b-APC (1:200, BioLegend, clone #MI/71), CD11c-BV421 (1:50, BD Bioscience, clone #HL3), GR1-PerCP Cy5.5 (1:200, BD Biosciences, clone #RB6-8C5), F4/80-BV711 (1:100, BioLegend, clone #BM8) and MHCII-APC/Cy7 (1:500, BioLegend, clone #M5/114.15.2). Single-stained beads were used to set compensation controls, and fluorescence-minus-one (FMO) controls were used to define population gates. Data were acquired using a BD LSRFortessa X-20 (BD Biosciences), and were analysed using FlowJo software v10.5.0 (BD Biosciences).
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