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11 protocols using cellstar tube

1

Removing Biofilms from Bath Toys

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Biofilms were removed from the inner surface of bath toys using an electric toothbrush (Oral-B®, Advanced Power) as follows: one half of each bath toy was put into a sterile beaker and submerged in 100–150 mL ultrapure water. The biofilm was then removed by brushing the bath toys’ surface for approximately 2 min and this suspension was collected in 50 mL tubes (CellStar® Tube, Greiner Bio-One). The whole procedure was repeated once with fresh ultrapure water to make sure all biofilm was removed. Biofilm clumps and clusters were subsequently dispersed with a sonication needle (Sonopuls HD 2200, Bandelin Sonorex, Rangendinen, Germany) for 30 s at 50% power and 40% intensity. Thereafter, the biofilm suspensions of one bath toy were combined in a sterile SCHOTT® bottle and the volume was filled up with ultrapure water to a total volume of 500 mL. The toothbrush heads were replaced for each sample to avoid cross contamination.
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2

Cortisol Quantification in Hair Samples

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Before quantification of cortisol in hairs, the samples had to be processed extensively first. In short, approximately 250 mg of hair was placed in a 50 mL Cellstar tube (Greiner Bio-one, Kremsmünster, Austria) covered with aluminium foil for protection against UV-light. After washing with 10 mL 2-propanol (1.09h634, Emsure®, Merck, Kenilworth, NY, USA) the hairs were dried at 37 °C for four days. Next, approximately 35 mg of clean hair was weighed off and placed in a microtube (clickcap, 2.0 mL Trefflab, Nolato Treff AG, Degersheim, Switserland). Three beads (3.2 mm, Cat. No 11079132 BioSpec Products, Bartlesville, OK, USA) were added to each tube. The hairs were now ground with a Tissuelyser II (Cat. No 85300, Qiagen, Hilden, Germany). For cortisol extraction [43 (link)] the hair samples were incubated with slow rotation for 24 h with 1 mL of methanol (1.06009.2500, Emsure). After centrifuging of the samples, 600 μL of the supernatant were transferred to a new tube. The extracts were dried in a Speedvac (Automatic Environmental Speedvac, AES1000, Savant Instruments, Woonsocket, RI, USA) with medium temperature for 2.5 to 3 h. The precipitate was then dissolved in 100 μL of phosphate buffer (assay diluent provided in the assay kit) [36 (link)] for 24 h on a shaker set at 300 rpm (KS250, Janke & Kunkel, Breisgau, Germany).
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3

Oral Fluid Sampling for OSCC Detection

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Oral fluid samples were obtained from healthy volunteers and patients with OSCC with their informed consent. Ethical approval was obtained from the Tokyo Dental College of Ethics Committee (approval number: 1-16-46R, 702) and the Japanese Foundation for Cancer Research (approval number: JFCR 2013-1112). This study was conducted according to the principles of the Declaration of Helsinki, and the informed consent was obtained from all participants. Donors were negative for a history of HIV, autoimmune disorders, hepatitis, and malignancy. The donors were asked to avoid eating, drinking, smoking, or oral hygiene procedures for at least 1 h before sampling. At 9 AM, the donors were directed to expectorate 5 mL of unstimulated OF into a 50 mL Cellstar tube (227270, Greiner Bio-One, Kremsmünster, Austria). The sample was placed on ice upon collection and then immediately stored at − 80 °C until analysis in subsequent experiments. Basic information, including age, sex, and tumor location, for all patients and the healthy controls is summarized in Table S1.
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4

Antibiotic Susceptibility Assay

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A mixture of 2.5 mL antibiotic solution and 2.5 mL of the cell suspension was added to a Cellstar tube (Greiner bio-one) resulting in a total volume of 5 mL at a concentration of 0.064 mg/L CIP, 0.640 mg/L CIP or 6.400 mg/L CIP. As control for live cells, the volumes with antibiotics were replaced by 2.5 mL CAMHB. As blank, 5 mL of CAMHB was used. All tubes were incubated for 24 h at 37 °C.
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5

Quantification of Enzalutamide and Metabolites

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Enzalutamide, N-desmethylenzalutamide, and the deuterated stable isotope-labeled D6-enzalutamide were obtained from Alsachim (Illkirch, France); dimethyl-sulfoxide (DMSO, Seccosolv) and acetonitrile (ACN) (Lichrosolv) were purchased from Merck (Darmstadt, Germany). Formic acid was obtained from Sigma-Aldrich (Zwijndrecht, The Netherlands). High-purity Milli-Q water was produced in the laboratory using a MilliQ Gradient water purification system (Millipore, Amsterdam, The Netherlands). Cellstar tubes (5 and 50 mL) were purchased from Greiner Bio-one (Alphen a/d Rijn, The Netherlands). Polypropylene screw vials and safe lock tubes were purchased from Agilent (Amstelveen, The Netherlands) and Eppendorf (Nijmegen, The Netherlands), respectively. Ethylenediaminetetraacetic acid (EDTA) plasma was prepared from EDTA whole blood obtained from Sanquin (Amsterdam, The Netherlands).
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6

Saliva Hormone Concentration Measurement

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Saliva was collected in 15-ml Cellstar tubes (Greiner Bio-One) and stored at −25°C. Samples were analyzed in duplicate for testosterone and cortisol, and the average was used in subsequent analyses. Hormone concentrations were measured using Luminescence Immunoassays (Immuno-Biological Laboratories GmbH). The average intra-assay and interassay coefficients were between 4.8 and 7.8% for cortisol and 6.5 and 8.6% for testosterone.
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7

Prostate Cancer Cell Line-Derived Extracellular Vesicles

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The two prostate cancer cell lines PC-3 and LNCaP American Type Culture Collection (ATCC, CRL-1435 and CRL-1740, USA) were used as a model to produce tdEVs. Both cell lines were cultured at 37°C and 5% CO2 in RPMI-1640 with L-glutamine medium (Lonza, Cat. No.: 12–702 F) supplemented with 10% (v/v) foetal bovine serum (FBS), 10 units/mL penicillin and 10 μg/mL streptomycin. The initial cell density was 10,000 cells/cm2 as recommended by the ATCC. Medium was refreshed every second day. At 80-90% confluence, cells were washed three times with phosphate-buffered solution (PBS) and cultured in FBS-free RPMI-1640 with L-glutamine medium (Lonza, Basel, Switzerland, Cat. No.: 12–702 F) supplemented with 1 unit/mL penicillin and 1 μg/mL streptomycin. After 2–3 days of cell culture, cell supernatant was collected in a 15 mL tube (Cellstar® tubes, Greiner Bio-one BV, Alphen a/d Rijn, The Netherlands) and centrifuged at 500–800 xg at room temperature for 10 min (Centrifuge 5804, Eppendorf, Hamburg, Germany). The pellet containing dead or apoptotic cells and large cell fragments was discarded. The collected supernatants containing PC-3 and LNCaP EVs were stored in aliquots at −80°C. Samples were thawed in a water bath at 37°C before use. EV size distribution and concentration were determined by both nanoparticle tracking analysis (NTA) (NanoSight NS500, UK) and flow cytometry (SI).
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8

Ante-partum Sow Fecal Sample Collection

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A total of 60 freshly voided faecal samples were obtained from sows two weeks ante partum in 20 different German pig farms (three sows per farm) during February to August 2019. After collection, samples were shock-frozen in liquid nitrogen and shipped at -20 °C. After reception at the institute, samples were stored at -80 °C. Before the assay, 1 g of frozen faeces was transferred into 15 ml tubes (Cellstar Tubes, Greiner Bio-One GmbH, Frickenhausen, Germany) and transferred into an anaerobic chamber.
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9

Establishment and Cultivation of Ascites-Derived Cell Lines

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Samples of the patients’ ascites were removed in CELLSTAR® tubes (Greiner Bio-One GmbH, Frickenhausen, Germany) and centrifuged at 1500 rpm for 5 min. The pellets were suspended in Dulbecco’s Modified Eagle’s Medium (DMEM; Wako, Osaka, Japan) containing 10 % heat-inactivated fetal bovine serum (FBS; Nichirei Biosciences, Tokyo, Japan), 100 IUmL−1 penicillin (Sigma, Steinheim, Germany), 100 μgmL−1 streptomycin (Sigma), and 0.5 mM sodium pyruvate (Sigma). Then, the pellets were plated into a 100-mm culture dish (Falcon, Becton-Dickinson Labware, Lincoln Park, NJ, USA) and cultivated at 37 °C in a humidified atmosphere with 5 % CO2. The cell lines were trypsinized every 7–10 days, and maintained in complete culture medium. PDA cell lines (Panc-1, MIAPaCa-2, RWP-1, SW1990) and breast cancer cell line (MCF-7) were purchased from American Type Culture Collection (ATCC; Manassas, VA, USA) for use in various assays. As above, these cell lines were also cultured and passed. The morphological findings on OCUP-A1 and OCUP-A2 were investigated by phase-contrast microscopy.
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10

Preparation of Hyaluronic Acid Injections

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Non-stabilised hyaluronic acid sodium salt from rooster (Sigma-Aldrich Chemie GmbH, Taufkirchen, Germany) was dissolved in isotonic saline solution 0.9% (Isotonic saline solution 0.9% ecoflac plus, B Braun Melsungen AG, Melsungen, Germany) at a concentration of 20 mg/mL and vortexed for 5 min.
Imeron® 300 (Bracco imaging Deutschland GmbH, Konstanz, Germany) (0.2 mL/mL), a radiographic contrast enhancer, was added directly during the dissolution process if needed. This solution was then stored in a 15 mL falcon tube (Cellstar® Tubes, 15 mL, Greiner Bio-One GmbH, Frickenhausen, Germany) for at least 12 h in a fridge and then transferred to 1 mL syringes (SOL-MTM, 1 mL, B Braun Melsungen AG).
As stabilised HA, the commercially available HA 20 mg/mL with lidocaine hydrochloride 3 mg/mL (Restylane® LYFT Lidocaine 1 mL; GALDERMA, Lausanne, Switzerland) was used.
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