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12 protocols using horseradish peroxidase conjugated anti rabbit igg secondary antibody

1

Western Blot Analysis of HOXA7 Protein

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Whole-cell lysates were prepared using cell lysis buffer (Invitrogen) supplemented with a protease inhibitor cocktail and 1 mM phenylmethylsulfonyl fluoride (Thermo Fisher Scientific, Waltham, MA, USA). Protein concentrations were measured using a bicinchoninic acid (BCA) assay kit (Thermo Fisher Scientific), and then 30 µg of proteins were separated by polyacrylamide gel electrophoresis. After electrotransfer to polyvinylidene difluoride membranes, non-specific binding sites were blocked with 5% non-fat milk in Tris-buffered saline with Tween 20 (TBST) for 1 hour at room temperature. Membranes were incubated with anti-homeobox A7 (HOXA7) and anti-GAPDH primary antibodies (Abcam, Cambridge, MA, USA) overnight at 4°C, washed with TBST and then incubated with an anti-rabbit horseradish peroxidase-conjugated IgG secondary antibody (Abcam) for 1 hour at room temperature. Immune complexes were visualized using enhanced chemiluminescence. GAPDH was used as an internal control. The gray value of protein bands was analyzed by ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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2

Western Blot Analysis of Protein Expression

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Total protein was extracted from PC cells using radioimmunoprecipitation assay (RIPA) lysis buffer (Thermo Fisher Scientific). In addition, protein concentration was detected by using a Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific). Proteins (30 μg per lane) were separated by 10% SDS‑PAGE electrophoresis and then transferred onto a polyvinylidene fluoride membrane (PVDF, Millipore, Billerica, MA, USA). After that, membranes were blocked with 5% non-fat milk in Tween 20/Tris-buffered saline (TBST) at room temperature for 1 h and then incubated with the primary antibodies overnight at 4°C: anti-USP34 (1:1000, Abcam), anti-PRR11 (1:1000, Abcam), anti-p-ERK (1:1000, Abcam), anti-ERK (1:1000, Abcam), anti-p-p38 (1:1000, Abcam), anti-p38 (1:1000, Abcam) and anti-β-actin (1:1000, Abcam). Later on, the membranes were incubated with anti-rabbit horseradish peroxidase-conjugated IgG secondary antibody (1:5000, Abcam) at room temperature for 1 h. Chemiluminescence Substrate Reagent Kit (Thermo Fisher Scientific) was used to develop signal on a ChemiDoc XRS + system (Bio-Rad, Berkeley, CA, USA). β-Actin was used as an endogenous control.
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3

Protein Expression Analysis of Cardiovascular Tissues

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Briefly, total protein samples of heart, aortic arch, and abdominal aorta were extracted with the Tissue Protein Rapid Extraction Kit (Dingguo, Beijing, PR China) and were determined with the bicinchoninic acid protein assay (Pierce, Rockford, IL, USA). Equal amounts of lysate proteins (100 mg) were loaded onto SDS-polyacrylamide gels (10% separation gels) and transferred to polyvinylidenefluoride membranes (EMD Millipore, Billerica, MA, USA) electrophoretically. After blocking with 5% nonfat milk in Tris-buffered saline (TBS) for 1 hour at room temperature, the membrane was incubated with angiotensin II (ANG II), endothelin 1 (ET-1), atrial natriuretic peptide (ANP), brain natriuretic peptide (BNP), C-reactive protein (CRP), interleukin-6 (IL-6), and tumor necrosis factor-α (TNF-α) (1:1,000, rabbit antibodies; Abcam, Cambridge, UK) overnight at 4°C. After washing with TBS containing 0.05% Tween-20 (TBST) for three times, the membrane was incubated with a horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody (Abcam) for 1 hour at room temperature. After washing with TBST three times again, the blotted proteins were imaged through the Odyssey Infrared Imaging System (LI-COR Biosciences, Lincon, NE, USA). The gray intensity of proteins were counted using ImageJ software.
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4

Quantifying ShTRAIL Protein Expression

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To assess the impact of endoplasmic reticulum expression of ShTRAIL on the stability and the production level, semi-quantitative western blot analysis was performed. First, from recombinant N. tabacum cells, a total of 200 μg ascorbate buffer extracted total protein was separated on reducing the 15% SDS-PAGE. Meanwhile, a total of 100 ng from recombinant human TRAIL (ab168898) was used as a standard. Then, the same western blot procedure was applied on the protein samples by using “Horseradish peroxidase conjugated” anti-rabbit IgG secondary antibody (1:5000; Abcam, ab97051). Then, the ECL substrates were utilized for generating subsequent chemiluminescent bands on the X-ray film. Finally, developed bands were analyzed densitometrically using “ImageJ” software (Free software from National Institute of Health).
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5

Quantitative Analysis of TNNT2 Protein in Zebrafish

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Total protein of compound-treated zebrafish was extracted with the Tissue Protein Rapid Extraction Kit (Keygen, China) and determined by performing the bicinchoninic acid (BCA) protein assay (Pierce, Waltham, MA). The equal amounts of 100 mg lysate proteins were loaded onto SDS-polyacrylamide gels (12%) at 80 V and electrophoretically transferred onto polyvinylidene difluoride membranes (Millipore, Billerica, MA) in Tris-glycine buffer at 100 V in an ice box. After blocking with 5% nonfat milk in TBST for 1 h at room temperature, the membrane was incubated with TNNT2 (1:1000, rabbit antibodies, Abcam, London, UK) overnight at 4 °C, After washed thrice with TBST, the membrane was incubated with a horseradish peroxidase-conjugated anti-rabbit Ig G secondary antibody (Abcam, Britain) for 1 h on a shaking table at room temperature, and washed thrice with TBST and the antibody-bound proteins were detected using the ECL chemiluminescence reagent (Pierce, Waltham, MA).
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6

CD90 Expression Analysis in SK-Hep-1 Cells

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SK-Hep-1 cells were lysed in lysis buffer (Gibco; Thermo Fisher Scientific, Inc.) and the concentration of total protein was analyzed using a BCA Protein Assay Kit (Sangon Biotech Co., Ltd, Shanghai, China). A total of 30 µg protein was added into each lane of the 10% SDS-PAGE gel and 5% skim milk (BD Biosciences) was used to block the polyvinylidene membranes for 10 min at room temperature. The membranes were then incubated with the primary antibody anti-CD90/Thy1 (catalog no. ab133350; 1:100; Abcam) at 4°C overnight. GAPDH was used as the internal control (anti-GAPDH antibody; catalog no. ab9485; 1:100, Abcam). The next day, the membranes were incubated with horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody for 1 h at room temperature (1:500 dilution; catalog no. ab7090; Abcam). The results were visualized using the enhanced chemiluminescence substrate kit (GE Healthcare, Chicago, IL, USA). All images were analyzed with ImageJ software, version 14.8 (National Institutes of Health, Bethesda, MD, USA).
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7

ARPE-19 Protein Quantification via Western Blot

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Total protein was extracted from ARPE-19 cells by CytoBuster™ Protein Extraction Reagent (Novagen, Madison, WI, USA), then separated by 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis. Proteins in gels were transferred onto polyvinylidene difluoride membranes (Millipore, Burlington, MA, USA). Membranes were blocked with 1% bovine serum albumin, then incubated with primary antibody (described below) overnight at 4°C. Membranes were then incubated with horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody (Abcam, Cambridge, MA, USA) at room temperature for 1 hour. Enhanced Chemiluminescence Reagent (Bio-Rad Laboratories, Hercules, CA, USA) was used to visualize immunoreactive bands. Primary antibodies were as follows: rabbit anti-VEGF (sc-7269; Santa Cruz Biotechnology), rabbit anti-GAPDH (5174; Cell Signaling Technology, Danvers, MA, USA), rabbit anti-CD9 (8457; Cell Signaling Technology), and rabbit anti-CD63 (sc-15363; Santa Cruz Biotechnology). Protein levels were quantified by ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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8

Quantification of Dopamine Receptor Expression

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Equal amounts of proteins (70 μg) from all groups were loaded in the wells and the RCs were separated on 5–13% of blue native PAGE gels and the Western blot procedure was carried out using the procedure described previously (Kang et al., 2009 (link)). The details of antibodies used are as follows; D1R (1:5000, Abcam-ab81296, Cambridge, UK), D2R (1:5000, Abcam-ab21218, Cambridge, UK), D3R (1:5000, Abcam-ab42114, Cambridge, UK), pDAT (1:5000, DAT Thr53, Phosphosolutions-p435-53, Aurora, CO, USA) and DAT (1:5000, Abcam- ab111468, Cambridge, UK) and detected with horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody (1:10000, Abcam-ab6721, Cambridge, UK). Immunoreactive bands were quantified by the software Image J (NIH). Coomassie blue R-350 stained membranes were used as loading control and normalized with the Western blot densitometric values (Welinder and Ekblad, 2011 (link); Sase et al., 2012 (link)).
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9

Protein Expression Analysis of Rat Brain Tissue

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Total protein from brain tissue of rats was extracted using RIPA buffer (Roche Diagnostics). Protein concentration was using BCA kit (Boster Biological Technology). In total, 30 µg protein sample was loaded into each lane, followed by separation by 8% SDS-PAGE. Next, proteins were transferred onto PVDF membranes, followed by blocking with 5% BSA (Thermo Fisher Scientific, Inc.) for 1 h at room temperature and incubation with primary antibodies against TLR4 (1:1,000; cat. no. 19811-1-AP; Proteintech Group, Inc.), GAPDH (1:2,500; cat. no. ab9485; Abcam), myeloid differentiation factor 88 (MyD88; 1:1,000; cat. no. ab2064; Abcam) and TIR-domain-containing adapter-inducing IFN-β (TRIF; 1:1,000; cat. no. ab13810; Abcam) overnight at 4˚C. The membranes were rinsed using 0.1% TBST three times for 5 min each, before being incubated with horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody (1:5,000; cat. no. ab288151; Abcam) for 1 h at room temperature. The membranes were rinsed using 0.1% TBST three times for 5 min each and developed using Pierce enhanced chemiluminescence system (Thermo Fisher Scientific, Inc.). GAPDH was used as the internal reference. Image J (Version 1.8.0, National Institutes of Health) was used for the analysis of the gray value.
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10

Quantitative Protein Analysis of Bone Tissue

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Same with the aforementioned method, 200 mg of bone tissue was ground. Total protein was extracted from bone tissues using RIPA lysis buffer (Beyotime, China). The protein concentration was determined using a BCA assay kit (Beyotime, China). A total of 30 µg protein/well was resolved using 10% SDS-PAGE and transferred to a PVDF membrane. Subsequently, 5% nonfat milk was used to block the membrane at 37°C for 1 h, followed by incubation at room temperature for 1 h with primary antibodies (Abcam, UK., LRP5 antibody: no. ab223203; Runx2 antibody: no. ab92336; Ostrix antibody: no. ab209484; RANKL antibody: no. ab239607; GAPDH antibody: ab8245). The membrane was then incubated with horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody (Abcam, UK., ab150113) at room temperature for 2 h. The bands were visualized by using enhanced chemiluminescence (ECL) reagent kit (Yeasen, China) and semiquantified with Image J software.
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