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Isolera prime

Manufactured by Biotage
Sourced in Sweden

The Isolera Prime is a laboratory instrument designed for flash chromatography. It is capable of automated sample loading, fraction collection, and eluent monitoring to facilitate the purification of chemical compounds.

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13 protocols using isolera prime

1

Purification and Characterization of Organic Compounds

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All starting materials and reagents were purchased from commercially available sources and used without further purification, with the exception of CH2Cl2, which was purified on a solvent purification system prior to reactions. 1H, and 13C NMR shifts were measured using the solvent residual peak as the internal standard and reported as follows: chemical shift, multiplicity (s = singlet, bs = broad singlet, d = doublet, t = triplet, dd = doublet of doublets, q = quartet, m = multiplet), coupling constant (Hz), integration. Infrared (IR) spectral bands are characterized as broad (br), strong (s), medium (m), and weak (w). Mass spectra were recorded on a spectrometer by the electrospray ionization (ESI) technique with a time-of-flight (TOF) mass analyzer. Microwave reactions were performed via the Biotage Initiator EXP US (manufacturer #: 355302)(external IR temperature sensor) in a sealed vessel. Where noted, reaction products were purified via silica gel chromatography using a Biotage Isolera Prime, with Biotage® SNAP Ultra 10 g or 25 g cartridges, in a solvent system of ethyl acetate (EtOAc) in hexane.
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2

Optimized Microwave-Assisted Organic Synthesis

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All starting materials and reagents were purchased from commercially available sources and used without further purification, with the exception of THF, which was purified on a solvent purification system prior to the reaction. 1H NMR shifts are measured using the solvent residual peak as the internal standard (CDCl3δ 7.26, THF-d8δ 3.58), and reported as follows: chemical shift, multiplicity (s = singlet, br s = broad singlet, d = doublet, t = triplet, p = pentet, dd = doublet of doublets, hept = heptet, q = quartet, m = multiplet), coupling constant (Hz), and integration. Microwave reactions were performed via the Biotage Initiator 2.5. Purification via column chromatography was performed on the Biotage Isolera Prime, with Biotage SNAP 12 g C18 cartridges, in a solvent system of acetonitrile (MeCN) and water (H2O), with each containing 0.05% trifluoroacetic acid (TFA). Column gradients are measured in terms of column volumes (CV). Other abbreviations used: THF = tetrahydrofuran; DMF = dimethylformamide; DMSO = dimethyl sulfoxide; HATU = 1-[bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxide hexafluorophosphate.
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3

Synthesis of αHT-1438 via Amide Coupling

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To a solution of αHT carboxylic acid S1 (10 mg, 0.051 mmol) in DMF (1.3 mL, 0.04 M) was added 2,6-lutidine (13 μL, 0.112 mmol) and HATU (21.3 mg, 0.056 mmol). The mixture was allowed to stir for 15 min at rt under an atmosphere of Ar gas. Spiro[adamantane-2,4′-piperidine]hydrochloride added (30 mg, 0.124 mmol) was then to the solution, at which point the reaction mixture was subjected to microwave irradiation at 85 °C for 15 min. The reaction mixture was then loaded onto a SNAP 12 g C18 silica gel column and subjected to reversed-phase column chromatography conditions (Biotage Isolera Prime, solvent gradient: 0–35% MeCN in H2O (30 CV); 35–60% MeCN in H2O (15 CV); 60–100% MeCN in H2O (5 CV); 100% MeCN (5 CV); MeCN and H2O each contained 0.05% TFA). Product fractions were concentrated in vacuo to remove MeCN, and the remaining aqueous solution was extracted with CH2Cl2 (3 × 15 mL). The combined organics were dried over Na2SO4, filtered, and concentrated in vacuo to yield αHT-1438 (66) as a brown oil (2.8 mg, 14% yield). 1H NMR (400 MHz, CDCl3) δ 7.46 (s, 1H), 7.27 (s, 1H), 3.82–3.64 (m, 2H), 3.24–3.11 (m, 2H), 2.41 (s, 3H), 2.11–2.03 (m, 2H), 1.96–1.76 (m, 6H), 1.73–1.55 (m, 10H).
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4

Beeswax Hydrocarbons Fractionation by Prep-HPLC

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Beeswax hydrocarbons (BWH) were extracted by hexane according to the method described in [24 (link)] with minor modifications. We have used a Biotage Isolera Prime (Biotage, Uppsala, Sweden) preparative chromatography system equipped with a UV detector using Biotage SNAP 50g cartridge (dimensions: 39 × 81 mm, column volume 66 mL) with normal phase silica (45–50 mm particle size) (Biotage, Uppsala, Sweden). To perform the separation at room temperature, the dry loading method was used. To prepare the sample, 5 g of BW was dissolved in 20 mL of hexane-acetone (96:4 w/w). Fifteen grams of silica gel were added to the resulting solution. This mixture was dried on a rotary evaporator to a free-flowing powder state. The powder was then loaded into the column using the external dry load method using Dry Load Vessel (Biotage, Uppsala, Sweden). Before the separation cycle, the column was equilibrated with 2 column volumes of hexane. The eluent flow rate was 15 mL/min during the separation. The separation process was monitored at 205 nm against hexane as a blank. Eluate was collected and dried using a rotary evaporator to constant weight.
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5

Purification and Characterization of Organic Compounds

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All starting materials and reagents were purchased from commercially available sources and used without further purification, with exception of CH2Cl2, which was purified on a solvent purification system prior to reactions.14 1H NMR shifts are measured using the solvent residual peak as the internal standard (CHCl3 δ 7.26), and reported as follows: chemical shift, multiplicity (s = singlet, bs = broad singlet, d = doublet, t = triplet, dd = doublet of doublet, q = quartet, m = multiplet), coupling constant (Hz), integration. 13C NMR shifts are measured using the solvent residual peak as the internal standard (CDCl3 δ 77.16), and reported as chemical shifts. Infrared (IR) spectral bands are characterized as broad (br), strong (s), medium (m), and weak (w). Mass spectra were recorded on a spectrometer by electrospray ionization (ESI) technique and time-of-flight (TOF) mass analyzer Microwave reactions were performed via the Biotage® Intiator (External IR Temperature Sensor). Where noted, reaction products were purified via silica gel chromatography using a Biotage® Isolera Prime, with Biotage® SNAP 10g cartridges, in a solvent system of ethyl acetate in hexane.
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6

Rhodium-Catalyzed Cycloaddition of Ethyl Diazoacetate

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Rhodium(II) acetate dimer (3.1 mg, .007 mmol) was added to a 2–5 mL microwave vial containing 5-methoxy-1,3-benzodioxole20 (500 μL, 4 mmol). A solution of ethyl diazoacetate (143 μL, 1 mmol) in 5-methoxy-1,3-benzodioxole (125 μL, 1 mmol) was added dropwise into the stirring rhodium acetate solution over the course of 20 minutes. At the conclusion of addition, the mixture was allowed to stir at rt overnight. The crude mixture was then loaded onto a SiliaSep 25 g flash silica gel column and subjected to column chromatography (Biotage Isolera Prime, solvent gradient: 0% EtOAc in hexane (40 CV); 0–4% EtOAc in hexane (8 CV); 4–5% EtOAc in hexane (2 CV); 5% EtOAc in hexane (2 CV); 5–6% EtOAc in hexane (1 CV); 6% EtOAc in hexane (4 CV)). Product fractions were concentrated in vacuo to yield 24 as a yellow oil (88.5 mg, 37% yield). 1H NMR (400 MHz, CDCl3) δ 6.32 (d, J = 9.5 Hz, 1H), 5.69 (dd, J = 14.3, 1.7 Hz, 2H), 5.53 (s, 1H), 5.33 (dd, J = 9.5, 7.1 Hz, 1H), 4.31 – 4.14 (m, 2H), 3.63 (s, 3H), 3.32 (d, J = 7.1 Hz, 1H), 1.26 (t, J = 7.1 Hz, 3H). 13C{1H} NMR (100 MHz, CDCl3) δ 170.0, 144.4, 140.3, 136.4, 116.9, 110.7, 98.4, 88.6, 61.3, 57.1, 49.9, 14.3. IR (thin film, KBr) 3427 (br), 2918 (m), 1743 (s), 1628 (s), 1314 (m), 1177 (m), 1033 (w), 742 (w) cm−1. HRMS (ESI-TOF) m/z [M + H]+ calc’d for C12H15O5+: 239.0914. Found: 239.0915.
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7

Rhodium-Catalyzed Cyclopropanation of Dimethoxybenzene

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Rhodium(II) acetate dimer (4 mg, .009 mmol) was added to a 2–5 mL microwave vial containing 1,2-dimethoxybenzene (675 μL, 5.28 mmol). A solution of ethyl diazoacetate (139 μL, 1.32 mmol) in 1,2-dimethoxybenzene (169 μL, 1.32 mmol) was added dropwise into the stirring rhodium acetate solution over the course of 20 minutes. At the conclusion of addition, the mixture was allowed to stir at rt overnight. The crude mixture was then loaded onto a SiliaSep 12 g flash silica gel column and subjected to column chromatography (Biotage Isolera Prime, solvent gradient: 3% EtOAc in hexane (20 CV); 3–6% EtOAc in hexane (5 CV); 6% EtOAc in hexane (7 CV); 6–12% EtOAc in hexane (5 CV)). Product fractions were concentrated in vacuo to yield 8 as a yellow oil (66 mg, 22% yield), with 1H NMR data consistent with previously reported data.10 1H NMR (400 MHz, CDCl3) δ 5.34 (dd, J = 4.3, 2.5 Hz, 2H), 4.12 (q, J = 7.1 Hz, 2H), 3.59 (s, 6H), 2.82 – 2.76 (m, 2H), 1.23 (t, J = 7.1 Hz, 3H), 0.76 (t, J = 3.9 Hz, 1H).
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8

Microwave-Assisted Cycloaddition for Heterocycle Synthesis

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To a solution of 13/14 (20 mg, 0.0714mmol, 1 eq) in CDCl3 (1 mL, 0.9 M) was added dimethyl acetylenedicarboxylate (16a, 100 μL, 0.814 mmol, 11 eq). The reaction was subjected to microwave irradiation at 150 °C for 2 h, and immediately purified by chromatography (Biotage Isolera Prime, SiliCycle SiliaSep 25 g silica gel, 40-63 μm 60 Å, solvent gradient: 0-25% EtOAc in hexanes (500 mL)). Product fractions were concentrated en vacuo to yield 15a as a pale, yellow oil (38 mg, 95% yield). Rf = 0.53 in 25% ethyl acetate. IR (thin film, KBr): 2956 (w), 2843 (w), 1716 (s), 1654 (w), 1614 (m), 1438 (m), 1379 (w), 1281 (b), 1146 (w), 1069 (s), 1005 (m), 933 (w), 902 (w), 878 (w), 847 (w), 812 (w), 787 (w), 766 (w), 700 (w), 6309 (w) cm−1. 1H NMR (400 MHz, CDCl3) δ 6.15 (d, J = 4.9 Hz, 1H), 5.39 (d, J = 4.9 Hz, 1H), 3.79 (d, J = 6.4 Hz, 6H), 3.56 (s, 3H), 1.59 (s, 3H). 13C{1H} NMR (101 MHz, CDCl3) δ 188.2, 163.1, 162.1, 146.5, 146.4, 143.1, 114.4, 94.0, 78.2, 55.1, 52.8. 52.8, 16.2. HRMS (ESI-TOF)m/z: [M+H]+ calc’d for C13H15O7+ : 283.0812 Found: 283.0817
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9

Automated Flash Chromatography for Extract Purification

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Automated flash chromatography was performed on a Biotage Isolera
Prime system equipped with a Spektra package (Biotage AB, Uppsala,
Sweden). A solution of the extract sample (260 mg in 2.5 mL of MeOH)
was loaded in a precolumn sample SNAP-C18 (1 g) and left for air-drying
overnight. Column chromatography was performed on a SNAP KP-C18-HS
(12 g) cartridge using water (solvent A) and methanol (solvent B)
as eluent solvents. A linear elution gradient was applied (2% B for
2 CV, 2 to 100% of B in 12 CV, and 100% B for 3 CV) at a flow rate
of 12 mL/min. The eluate was automatically collected in fractions
based on the photodiode array detector signal (range 200–400
nm, monitor λ1 = 280 nm, λ2 = 320 nm). Fractions were
pooled in homogeneous groups, the organic solvent was removed under
reduced pressure, and residues were freeze-dried, obtaining fractions
A, B1–B4, C, D, and E.
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10

Synthesis of Biotin-Phosphothiol Conjugate

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A mixture of 50 mg of biotin-peg3-proprionic acid (1 eq., 0.11 mmol), 34 μl of diisopropylcarbodiimide (2 eq., 0.22 mmol), and 39 mg of N-hydroxysuccinimide (NHS; 3 eq., 0.33 mmol) was dissolved into 5 ml of dichloromethane (DCM) under argon. The reaction was stirred at room temperature (RT) overnight. To purify the product NHS-ester, the mixture was separated on Biotage SNAP Cartridges (C18, 10 g) with a linear gradient starting from DCM:MeOH (99:1, v/v) for 5 min to DCM:MeOH (80:20, v/v) over 15 min at a flow rate of 12 ml/min by flash chromatography (Biotage Isolera Prime, USA). To a stirred solution of 58 mg of NHS-ester (1 eq., 0.107 mmol) in DCM (5 ml), we added 35 mg of phosphothiol (1.1 eq., 0.177 mmol) and 17 ul of triethylamine (1 eq., 0.107 mmol) successively under argon. The reaction was stirred at RT overnight. The resulting clear solution was then concentrated under reduced pressure and purified by flash chromatography with a linear gradient starting at 100% DCM for 5 min to DCM:MeOH (75:25, v/v) over 20 min to give the desired product (yield around 40%). Nuclear magnetic resonance and high-resolution MS analyses were described previously in detail (39 (link)). The product was dried down, aliquoted into 25 mM stock solutions in dry ACN, and frozen for future use.
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