The largest database of trusted experimental protocols

5 protocols using diverset

1

Phenotypic Screening of Diverse Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
The chemical small molecule library consisting of 34,000 diverse compounds (DIVERSet) used for phenotypic screening as well as CCI-007 were purchased from Chembridge Corporation (San Diego, California, USA).
+ Open protocol
+ Expand
2

Screening Compound F8 for Bioactivity

Check if the same lab product or an alternative is used in the 5 most similar protocols
The experimental compound was sourced from the ChemBridge DIVERset library (ChemBridge Corporation, San Diego, CA) and was pre-diluted to 10 mM in dimethyl sulfoxide (DMSO). The compound (methyl 5-[(dimethylamino)carbonyl]-4-methyl-2-[(3-phenyl-2-propynoyl) amino]-3-thiophenecarboxylate), also known as F8, was found in said library set and used for the experiments detailed below. Aliquots and other concentrations of F8 were thawed and diluted with DMSO. The positive control, H2O2, was diluted in 1 x phosphate-buffered saline (PBS).
+ Open protocol
+ Expand
3

High-Throughput Ubiquitination Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The pre-reaction mixture one consisted of 40 mM Tris-HCl (pH 7.5), 5 mM MgCl2, 2 mM DTT, 5 mM ATP, 20 nM E1, 350 nM E2 (UbcH5), 25 nM HA-tagged Mdm2, 200 nM MdmX. First, 10 μl of the pre-reaction one was dispensed in each well of 384-well plate (Multiflo, Biotek, Winooski, VT, USA). Then compounds from a chemical library (DIVERSet, ChemBridge) were added in a volume of 8 nl of each by the robot pin tool (PerkinElmer JANUS, Waltham, MA, USA, V&P Scientific 384 Pin tool, San Diego, CA, USA). The reaction was started by adding premixture two, which consisted of 250 nM HA-tagged ubiquitin and 50 nM ubiquitin cryptate at 2 μl per well. After incubation at 37 °C for 1.5 h, the reaction was terminated by adding 10 μl of the detection buffer, which contains 50 mM phosphate buffer pH 7.0, 0.1% BSA, 0.1 M EDTA, 0.8 M KF and 20 nM XL665-conjugated antibody against HA tag. The reaction was kept for 1 h at room temperature before measuring the FRET signal. For the FRET measurement in Perkin Elmer Envision 2103 Multilabel Reader, there is a 100 μs time delay between the excitation (320 nm) and measurement at two different wavelengths (615  and 665 nm), then calculating the ratio for each well individually (ratio=665 nm/615 nm x104). The 104 multiplying factor is introduced for convenient data processing.
+ Open protocol
+ Expand
4

High-Throughput Screening of PRMT5 Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ten-thousand small-molecule compounds from a DIVERSet library (ChemBridge) were screened as follows: High-binding 96-well plates (Fisher Scientific) were coated with 100 ng of recombinant SmD3 (the substrate) at 4 oC overnight. After blocking with 5% BSA for 30 min at room-temperature, PRMT5-WDR77 (800 ng) was added to each well. DIVERSet compounds were then transferred to individual wells to a final concentration of 20 μM. The enzyme reaction was initiated by the addition of the methyl donor (AdoMet, 10 μM). Reaction mixtures were incubated for 3 h at 30 oC. The wells were then washed twice with TBST (25 mM Tris [pH 7.5], 150 mM NaCl, 0.1% Tween 20) and blocked in TBST containing 2% BSA for 30 min. The methylarginine-specific primary antibody ab412 (Abcam) (1:1,000) and secondary antibody (anti-mouse IgG-peroxidase at 1:10,000; Fisher Scientific) were added to each well and the mixtures were incubated at room-temperature for 1 h. After three washes with TBST, 0.1 ml of 3,3′,5,5′-tetramethylbenzidine (TMB) substrate (0.1 mg/ml) was added to each well. Wells were incubated for 5 min in the dark at room-temperature and the reaction was stopped by addition of 0.1 ml of 2 M H2SO4 per well. Potential “hits” were compounds associated with at least a 90% reduction in optical density at 450 nm (in duplicate).
+ Open protocol
+ Expand
5

Enzyme Activity Assay for Clostridium kluyveri Diaphorase

Check if the same lab product or an alternative is used in the 5 most similar protocols
The screening library DIVERSet and the resupply compounds were purchased from Chembridge (San Diego, CA). Clostridium kluyveri diaphorase was obtained from Worthington Biochemical (Lakewood, NJ), while resazurin, NADP + , NADPH, l-malic acid, l-aspartic acid, fumaric acid, MnCl 2 , and DMSO were purchased from Sigma-Aldrich (St. Louis, MO). Tris-HCl and NaCl were acquired from Merck (Kenilworth, NJ), and Triton X-100 was purchased from SERVA (Heidelberg, Germany). Microplates were bought from Greiner Bio-One (Monroe, NC).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!