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5 protocols using anti atp5a

1

Immunohistochemical Staining of ATP5A and MYH6

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Tissue sections on the glass slides were incubated for 1 h at room temperature in 1:20 and 1:100 dilutions of anti-ATP5A and anti-MYH6 primary monoclonal antibodies, respectively (Proteintech, Manchester, UK). HRP/DAB staining (EnVision universal kit; Dako), including anti-rabbit secondary antibody incubation, was carried out according to the manufacturer’s instructions. Slides were counterstained with haematoxylin.
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2

Kidney and Cell Protein Extraction and Western Blot Analysis

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Total protein from kidneys and cells were extracted as previously described11 (link). Incubation was carried out with the following primary antibodies: anti-P2X7R (Santa Cruz Biotechnology, Dallas, TX, 1:200), anti-mouse NLRP3 (Adipogen, San Diego, CA, 1:1000), anti-human NLRP3 (Cell Signaling Technology, Beverly, MA, 1:500), anti-ASC (Santa Cruz Biotechnology, Dallas, TX, 1:200), anti-IL-1β (Abcam, Cambridge, MA, 1:500), anti-mouse capsase-1 (Adipogen, 1:1000), anti-human caspase-1 (Cell Signaling Technology, 1:500), anti-human cleaved caspase-1 (Cell Signaling Technology, 1:500, only for Supplementary Fig. 5c), anti-ATP5a (Proteintech, Wuhan, China, 1:1000), anti-ATP5b (Proteintech, 1:1000), anti-Tubulin (Abcam, 1:2000), and anti-GAPDH (Cell Signaling Technology, 1:2000). After incubation with the appropriate horseradish peroxidase-conjugated IgG (Cell Signaling Technology), specific signals were determined on a Tanon 5200 Chemiluminescent Imaging System (Tanon, Shanghai) by using an ECL kit (Thermo Scientific).
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3

Western Blot Analysis of Mitochondrial Proteins

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600g homogenates were used for western blot analysis as described before [3 (link)]. In brief, a total of 10 μg protein was separated on 10% acrylamide/bis-acrylamide gels and transferred to nitrocellulose membranes (Amersham Biosciences) using a CAPS buffer (10 mM 3-[cyclohexylamino]-1-propane sulfonic acid, pH 11; 10% methanol). The following primary antibodies were diluted in 1% western blocking reagent (Roche Diagnostics) dissolved in TBS-T: anti-GAPDH (Glyceraldehyde-3-phosphate dehydrogenase, 1:10000, Trevigen), anti-NDUFS4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4; 1:2000, Abcam), anti-SDHA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit; 1:5000, Abcam), anti-UQCRC2 (Cytochrome b-c1 complex subunit 2; 1:1000, Sigma), anti-MTCO2 (Cytochrome c oxidase subunit 2; 1:5000, Abcam), anti-ATP5A (ATP synthase subunit alpha; 1:1000, Protein Tech), anti-SCOT (Succinyl-CoA:3-ketoacid coenzyme A transferase 1; 1:1000, Abnova). Horseradish peroxidase-labeled secondary antibodies were used at a dilution of 1:1000 (Dako) and detection was carried out with Lumi-Light POD-substrate (Roche).
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4

Protein Expression Analysis in Cells

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Protein was extracted using protein extraction solution (PRO-PREP, iNtRON Biotechnology, Kyungki-Do, Korea). The protein, 20 µg, was electrophoresed on a 10% polyacrylamide gel, and transferred to a nitrocellulose membrane (Atoh, Tokyo, Japan). The membranes were reacted overnight at 4°C with the primary antibodies. The primary antibodies applied were anti-ATP5A (Proteintech), anti-8-OHdG (ABBIOTEC, San Diego, CA), anti-XIAP (Abcam), anti-cleaved-caspase-3 (Abcam), or anti-caspase-9 (Proteintech) at a concentration of 0.5, 2.5, 1.0, 1.0, or 1.0 µg/ml. After the incubation with peroxidase-labeled goat anti-mouse or anti-rabbit IgG antibody (Dako Cytomation) for 1 hour at room temperature and vigorous washing, the nitrocellulose membrane was incubated with Chemiluminescence Luminol Reagent (Immuno Star LD, Wako, Tokyo, Japan) and photographed digitally using ImageQuant LAS 4000 mini (GE healthcare Japan Co, Tokyo, Japan). Immunoblot using anti-actin monoclonal antibody (Sigma Chemical Co. St. Louis, MO) was used for standardization. Intensity was measured using the Multi Gauge v3.1 (Fujifilm, Tokyo, Japan). Experiments were repeated at least three times.
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5

Quantification of TFAM and ATP5A Levels

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For quantification, immunoblotting for TFAM and ATP5A was performed on MLO-Y4 cells. Protein was extracted using protein extraction solution (PRO-PREP, iNtRON Biotechnology, Kyungki-Do, Korea). The protein, 20 µg, was electrophoresed on a 10% polyacrylamide gel, and transferred to a nitrocellulose membrane (Atoh, Tokyo, Japan). The membranes were reacted overnight at 4 ˚C with the primary antibodies. The Primary antibodies applied were anti-ATP5A (Proteintech) or anti-TFAM (Invitrogen, Waltham, MA, USA) antibody at a concentration of 0.5 µg/mL. After the incubation with peroxidase-labeled goat anti-mouse or anti-rabbit IgG antibody (Dako Cytomation, Santa Clara, CA, USA) at a concentration of 0.7 µg/mL each for 1 h at room temperature and vigorous washing, the nitrocellulose membrane was incubated with Chemiluminescence Luminol Reagent (Immuno Star LD, Wako, Tokyo, Japan) and photographed digitally using ImageQuant LAS 4000 mini (GE healthcare Japan Co, Tokyo, Japan). Immunoblot using anti-actin monoclonal antibody (Sigma Chemical Co. St. Louis, MO, USA) was used for standardization. Intensity was measured using the Multi Gauge v3.1 (Fujifilm, Tokyo, Japan). Experiments were repeated at least three times.
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