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4 protocols using bromopyruvic acid

1

Pharmacological Screening Library Compounds

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Rifampicin was purchased from AppliChem. Bromopyruvic acid, dexamethasone, gentamicin, staurosporine, and thalidomide were purchased from Sigma-Aldrich. Cyclosporin A, doramapimod, moxifloxacin, necrostatin-1, necrostatin-5, and tacrolimus (FK506) were obtained from Cayman Chemicals. BMS-582949, pamapimod, and Z-VAD-FMK were purchased from Selleckchem. Puromycin dihydrochloride was from Carl Roth (Germany). GR agonist BI653048 was provided by the opnMe platform (Boehringer Ingelheim). The Prestwick chemical library was used for high-throughput screening.
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2

Enzymatic Characterization of Lysozyme

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Lysozyme (Lyz) from chicken egg white (about 100,000 U/mg), L-cysteine (Cys), L-cystine, L-glutathione (GSH), oxidized glutathione (GSSG), cysteamine, cystamine, 1-chloro-2,4-dinitrobenzene (CDNB), 5,5′-dithiobis(2-nitrobenzoic acid) (DTNB), 4-chloro-7-nitrobenzofurazane (NBD-Cl), dithiotreitol (DTT), bromopyruvic acid, lysozyme activity kit, pepsin A and all other reagents were from SIGMA-Aldrich (St. Louis, Mo, USA).
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3

Bovine α-Chymotrypsinogen A Characterization

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α-Chymotrypsinogen A (ChTg) from bovine pancreas. The protein was tested for purity by using an FPLC system (Amersham-Pharmacia, Sweden) equipped with a column Superose-12 (data not shown). Bromopyruvic acid (BrP), cystamine, L-cysteine (Cys), 1-chloro-2,4-dinitrobenzene (CDNB), 5,5′-dithiobis(2-nitrobenzoic acid) (DTNB), dithiothreitol (DTT), ethylendiamminotetreaacetic acid (EDTA), L-glutathione (GSH), oxidized glutathione (GSSG), homocystine, N-acetyl-L-tryptophanamide (NATA), 4-chloro-7-nitrobenzofurazane (NBD-Cl), and all other reagents were from Sigma-Aldrich (St. Louis, Mo, USA). GSH solutions were freshly prepared and the amount of GSSG was less than 1% as assayed by standard analytical procedures.
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4

Investigating RNase A Enzymatic Activity

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Ribonuclease A (RNase) from bovine pancreas (Type XII-A, 75–125 Kunitz units/mg protein), bromopyruvic acid, copper sulfate, dithiothreitol (DTT), ethylendiamminotetreaacetic acid (EDTA), 5,5′-dithiobis(2-nitrobenzoic acid) (DTNB), L-glutathione (GSH), oxidized glutathione (GSSG), β-mercaptoethanol (β-ME), Ribonuclease A activity kit and all other reagents were purchased from Sigma-Aldrich (St. Louis, MO, USA).
The GSH solutions were prepared immediately before use and the GSSG concentration was less than 1% as assayed by standard analytical procedures.
All organic solvents were of LC-MS grade. Acetonitrile (ACN), methanol (MeOH), formic acid (FA) and water were from Merck (Darmstadt, Germany). Trypsin (Gold MS Grade) was from Promega (Madison, WI, USA).
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