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3 protocols using microamp fast optical 0.1 ml 96 well plates

1

Staphylococcus Lysostaphin Binding Assay

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Oligonucleotides (25 nmol scale, standard desalting) were from Integrated DNA Technology (San Diego, CA, USA). Commercial lysostaphin (ssLys; short for Staphylococcus simulans lysostaphin) and SYPRO Orange 5000× Protein Stain were from Sigma (St Louis, MO, USA). MicroAmp® Fast Optical 0.1 ml 96-Well Plates and MicroAmp® Optical Adhesive Film were from Applied Biosystems (Bedford, MA, USA). Restriction enzymes and PCR reagents were purchased from New England BioLabs (Ipswich, MA, USA). Plasmid purification kits and Ni-NTA resin were from Qiagen (Valencia, CA, USA). Growth medium was from Becton Dickinson (Franklin Lakes, NJ, USA). PCR cleanup and gel extraction kits were from Zymo Research (Irvine, CA, USA). SP Fast Flow was from GE Healthcare Life Sciences (Little Chalfont, Buckinghamshire, UK). SYTOX® Green nucleic acid stain was purchased from Life Technologies (Carlsbad, CA). MBEC Biofilm Inoculator 96-well plates were purchased from Innovotech (Edmonton, AB, Canada). Unless noted, all other chemicals and reagents were from Fisher Scientific (Pittsburgh, PA, USA).
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2

Oligonucleotide and Reagent Acquisition for Molecular Biology

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oligonucleotides for sequencing and standard PCR methods (25 nmol scale, standard desalting) and oligonucleotides for gene synthesis (100-nmol scale, PAGE Purified) were purchased from Integrated DNA technology (San Diego, CA). Nitrocefin was purchased from Oxoid (Cambridge, UK). Human lysozyme and SYPRO Orange 5,000 × Protein Stain were purchased from Sigma (St. Louis, MO). MicroAmp® Fast Optical 0.1 ml 96-Well Plates and MicroAmp® Optical Adhesive Film were from Applied Biosystems (Bedford, MA). Restriction enzymes and PCR reagents were purchased from New England Bio-Labs (Ipswich, MA). Growth media were purchased from Becton–Dickinson (Franklin Lakes, NJ). Plasmid purification kits and Ni–NtA resin were purchased from Qiagen (Valencia, CA). PCR cleanup and gel extraction kits were from Zymo Research (Irvine, CA). Peptides derived from P99βL were ordered from GenScript (Piscataway, NJ) and were greater than 85 % pure. Biotinylated tracer peptides were purchased from twenty-first century Biochemicals (Marlborough, MA). MHC-II-DR molecules were purchased from Benaroya Research Institute (Seattle, Wa), anti-MHC-II-DR antibody from Biolegend (San Diego, CA), and DELFIA Eu-labeled streptavidin was from Perki-nElmer (Boston, MA). Unless noted, all other chemicals and reagents were from VWR (Radnor, PA).
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3

Oligonucleotides and Protein Purification Protocol

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oligonucleotides for sequencing and standard PCR methods (25 nmol scale, standard desalting) and oligonucleotides for gene synthesis (100 nmol scale, PAGE Purified) were purchased from Integrated DNA Technology (San Diego, CA). Nitrocefin was purchased from Oxoid (Cambridge, UK). Human lysozyme and SYPRO Orange 5000× Protein Stain were purchased from Sigma (St. Louis, MO). MicroAmp Fast Optical 0.1 ml 96-Well Plates and MicroAmp Optical Adhesive Film were from Applied Biosystems (Bedford, MA). Restriction enzymes and PCR reagents were purchased from New England BioLabs (Ipswich, MA). Growth media was purchased from Becton Dickinson (Franklin Lakes, NJ). Plasmid purification kits and Ni-NTA resin were purchased from Qiagen (Valencia, CA). PCR cleanup and gel extraction kits were from Zymo Research (Irvine, CA). Peptides derived from P99βL were ordered from GenScript (Piscataway, NJ), and were greater than 85% pure. Biotinylated tracer peptides were purchased from 21st Century Biochemicals (Marlborough, MA). MHC II DR molecules were purchased from Benaroya Research Institute (Seattle, WA), anti-MHC II-DR antibody from Biolegend (San Diego, CA), and DELFIA Eu-labeled Streptavidin was from PerkinElmer (Boston, MA). Unless noted, all other chemicals and reagents were from VWR (Radnor, PA).
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