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7 protocols using anti pgc 1α antibody

1

Quantifying Oxidative DNA Damage in Kidney

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Paraffin-embedded kidney tissue sectioned at 3-μm thickness was deparaffinized in xylene and rehydrated in a graded ethanol series to phosphate-buffered saline. 8-Hydroxydeoxyguanosine (8-OHdG) is a DNA oxidation product that was measured to assess DNA damage. Nutrient sensing signal AMPKα2 and PGC-1α were also analyzed by immunohistochemistry. Following blocking with immunoblock (BIOTnA Biotech., Kaohsiung, Taiwan), the sections were incubated for 2 hr at room temperature with an anti-8-OHdG antibody (1:100, JaICA, Shizuoka, Japan), an anti-AMPKα2 antibody (1:400, Proteintech, Rosemont, IL, USA), and an anti-PGC-1α antibody (1:200, Abcam, Cambridge, MA, USA). Immunoreactivity was revealed using the polymer-horseradish peroxidase (HRP) labelling kit (BIOTnA Biotech). For the substrate-chromogen reaction, 3,3′-diaminobenzidine (DAB) was used. Identical staining protocol omitting incubation with primary antibody was employed to prepare samples that were used as negative controls. Quantitative analysis of positive cells per microscopic field (X400) in the renal sections was performed as we described previously [7 (link)].
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2

Western Blot Analysis of Cellular Proteins

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Western blot analysis was performed as our article described previously [4 (link)]. Total proteins from the BMSCs, MLE-12 cells, and lung tissues were lysed by the RIPA buffer (Beyotime, P0013B), and protein levels were measured with a BCA assay. The protein lysates (30 μg protein) were separated by 8%-12% SDS-PAGE and transferred onto the PVDF membrane. The membranes were blocked with 5% nonfat milk. After washing with TBST three times, the membranes were incubated with anti-CD63 antibody (1 : 1000; CST, USA), anti-TSG101 antibody (1 : 1000; CST, USA), anti- Nrf1 antibody (1 : 1000; Abcam, USA), anti-Tfam antibody (1 : 1000; Abcam, USA), anti-PGC-1α antibody (1 : 1000; Abcam, USA), anti-p-Drp1 antibody (1 : 1000; CST, USA), and anti-β-actin antibody (1 : 10000; CST, USA) overnight at 4°C. After washing with TBST, the membranes were again incubated with a secondary antibody for 1 h at room temperature. Finally, the membranes were visualized with a chemiluminescence system. The expression of proteins was normalized to β-actin as a reference.
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3

Immunohistochemistry of Phosphorylated AMPK and PGC-1α

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Paraffin-embedded tissues sectioned at 3-μm thickness were deparaffinized in xylene and rehydrated in a graded ethanol series to phosphate-buffered saline. Following blocking with immunoblock (BIOTnA Biotech., Kaohsiung, Taiwan), the sections were incubated for 2 h at room temperature with an anti-phosphorylated AMPKα2 antibody (1:400, Cell Signaling, Danvers, MA, USA) or an anti-PGC-1α antibody (1:200, Abcam, Cambridge, MA, USA). Immunoreactivity was revealed using the polymer-horseradish peroxidase (HRP) labeling kit (BIOTnA Biotech). For the substrate–chromogen reaction, 3,30-diaminobenzidine (DAB) was used. An identical staining protocol omitting incubation with primary antibody was employed to prepare samples that were used as negative controls. Renal cells positive for immunostaining were examined in 10 randomly selected ×400 microscopic fields per section. The number of immunostained cells was expressed as we described previously [18 (link)].
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4

Immunohistochemical Analysis of Liver Tissue

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Immunostaining was performed on paraffin embedded liver tissue, sectioned at 5 μm thickness. Tissue was first deparaffinized, dehydrated, and then blocked with 5% normal goat serum. This was followed by overnight incubation with 1:200 diluted primary rabbit antibodies that include anti-PCNA (Cat. # sc-7907, Santa Cruz, Dallas, TX), anti-Tom 20 (Cat. # sc11415, Santa Cruz, Dallas, TX), anti-P-AMPK (Cat. #2531; Cell Signaling, Boston, MA), anti-TFAM (Cat. # ab-252432, Abcam, Cambridge, MA) or anti-PGC-1α antibody (Cat. # ab-722330, Abcam, Cambridge, MA). The next day, sections were washed in PBS, followed by application of the secondary antibody, Alexa Fluor 594-conjugated goat anti-rabbit antibody (Cat. # A11037, Life Technologies, Eugene, OR). After staining nuclei with DAPI containing mounting medium (Life Technologies), slides were imaged with a Zeiss Axiovert inverted fluorescence microscope (Carl Zeiss AG, Jena, Germany). Quantitation of the fluorescence intensity signals was done by measuring the mean grey values of the signal from each tissue section with ImageJ(http://rsb.info.nih.gov/ij/).
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5

Immunofluorescence Staining of PGC-1α in PAC Cells

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PAC were cultured on coverslips. The cells were treated with 0.2% Triton X-100 in PBS and fixed in 3.7% formaldehyde in PBS for 15 min. The fixed cells were then permeabilized with 0.5% Triton X-100 in PBS, blocked in 3% bovine serum albumin in PBS for 1 h, and incubated with an anti-PGC-1α antibody (1 : 500, Abcam, cat. number ab54481) overnight at 4°C. After washing twice in 0.01% Triton X-100 in PBS, the cells were incubated in Alexa Fluor 488 (1 : 500; Abcam, cat. number 150077) for 1 h. To stain the cell nuclei, the cells were washed twice and mounted in ProLong Diamond Antifade Mountant containing 4′6-diamidino-2-phenylindole (Life Technologies, Eugene, OR, USA). Images were captured with an Eclipse Ni-E microscope (Nikon) and analyzed with ImageJ software.
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6

Immunohistochemical Analysis of Liver Tissue

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Immunostaining was performed on paraffin embedded liver tissue, sectioned at 5 μm thickness. Tissue was first deparaffinized, dehydrated, and then blocked with 5% normal goat serum. This was followed by overnight incubation with 1:200 diluted primary rabbit antibodies that include anti-PCNA (Cat. # sc-7907, Santa Cruz, Dallas, TX), anti-Tom 20 (Cat. # sc11415, Santa Cruz, Dallas, TX), anti-P-AMPK (Cat. #2531; Cell Signaling, Boston, MA), anti-TFAM (Cat. # ab-252432, Abcam, Cambridge, MA) or anti-PGC-1α antibody (Cat. # ab-722330, Abcam, Cambridge, MA). The next day, sections were washed in PBS, followed by application of the secondary antibody, Alexa Fluor 594-conjugated goat anti-rabbit antibody (Cat. # A11037, Life Technologies, Eugene, OR). After staining nuclei with DAPI containing mounting medium (Life Technologies), slides were imaged with a Zeiss Axiovert inverted fluorescence microscope (Carl Zeiss AG, Jena, Germany). Quantitation of the fluorescence intensity signals was done by measuring the mean grey values of the signal from each tissue section with ImageJ(http://rsb.info.nih.gov/ij/).
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7

Western Blot Analysis of Cardiomyocytes

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Cardiomyocytes were washed with PBS and lysed with a radioimmunoprecipitation assay (RIPA) lysis buffer(Beyotime biotechnology, China ) containing protease and phosphatase inhibitors (Sigma, U.S.A ).Then the protein was quanti ed by BCA assay (Thermo sher USA). Primary antibodies used included Anti-PINK1 antibody (1:1000, Abcam, USA), Anti-PGC-1α antibody (1:1000, Abcam, U.S.A) and anti-β-actin antibody (1:5000, Proteintech, USA). Second antibody used was goal anti-rabbit IgG-HRP (1:5000,Proteintech, USA). The protein bands were examined by ECL Substrate (FDbio, Hangzhou, China) and visualized by Gene Gnome Imaging System (Syngene Bio Imaging) and quanti ed by densitometry with Image J software (NIH).
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