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163 protocols using α sma

1

Histological Evaluation of Pulmonary Vascular Remodeling

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The isolated RV and lung tissues were soaked in 4% paraformaldehyde for 24 h and embedded in paraffin. PA wall thickness (PAWT) and cardiomyocyte hypertrophy (calculated based on the cardiomyocyte cross-sectional area (CSA)) were determined by hematoxylin and eosin (H&E) staining. Twenty PAs (diameter 30–100 µm) were randomly selected at high magnification (×400) to analyze PAWT (calculated as medial wall thickness index (%) = (external diameter–internal diameter)/external diameter×100).
To assess the fibrosis of the RV and lung tissues, the tissues were subjected to Masson’s trichrome staining and analyzed based on the percentage of collagen fiber deposition.
Immunohistochemical staining of lung sections with anti-alpha smooth muscle actin (α-SMA, 1:200, Proteintech Group, Rosemont, IL, USA) antibody was performed to identify the PASMC and to assess the degree of PA muscularization, based on the proportion of α-SMA-positive sites of circumference in PA medial wall: non-muscularized (none): ≤25%, partly muscularized (partly): 25–75%, and fully muscularized (fully): ≥75%.
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2

Protein Expression Analysis by SDS-PAGE and Western Blot

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Protein concentration was quantified using a bicinchoninic acid protein assay kit and boiled with the sample buffer in a water bath for 5 min. Protein samples were separated with 15% SDS-PAGE gels for 2 h and transferred onto a polyvinylidene difluoride membrane, which was subsequently blocked in 5% non-fat milk for 2 h. Blots were probed using the primary antibodies. The anti-vimentin, a-SMA, E-cadherin and Snail antibody was from ProteinTech Group. After three times washing with tris buffered saline tween, the horseradish peroxidase-conjugated secondary antibodies were added. Antigen-antibody complexes were visualized by enhanced chemiluminescence.
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3

Protein Expression Analysis of HK-2 Cells

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HK-2 cells were cultured in cellular six-well plates. Cellular proteins from different subgroups were extracted for WB electrophoresis as described in the previous research (Liu et al., 2022 (link)). The antibodies applied in this research are listed as follows: APOC1(Abcam, United States, 1:1,000 dilution), GAPDH (Proteintech Group, China, 1:4,000 dilution), a-SMA, vimentin, N-cadherin and E-cadherin (Proteintech Group, China, 1:1,000 dilution), NF-κB, and p-NF-κB (CST, USA, 1:1,000 dilution).
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4

Liver Protein Isolation and Western Blot

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Total liver protein was isolated using RIPA lysis buffer (CWBIO, Beijing, China) containing protease inhibitor cocktail (CWBIO). Equal amounts of protein were separated using 8% SDS‐PAGE gel electrophoresis in a Bio‐Rad Mini‐Protean system. The separated proteins were then transferred to nitrocellulose membrane (Millipore, MA) and incubated with specific primary antibodies (aSMA, ID1, HGF, WNT2, c‐MET, GSK‐3β, Proteintech, Wuhan, China; phosphor‐c‐MET, phosphor‐GSK‐3β, Abclonal, Wuhan, China). After washing and incubation with the secondary antibody, antibody complexes bound to specific liver proteins were visualized using the BIO‐RAD Gel Doc XR+ system (Bio‐Rad, CA).
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5

Western Blot Analysis of Cell Markers

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Confluent cultured cells were washed twice with cold phosphate-buffered saline (PBS) and detached using a cell scraper and lysed in 100ul cold RIPA buffer supplemented with phenylmethylsulfonyl fluoride (PMSF). The protein concentration was determined by the bicinchoninic acid method (BCA, Beyotime). The protein samples were separated by SDS-polyacrylamide gel electrophoresis and transferred into polyvinylidene difluoride membranes (PVDF, Millipore). The membranes were blocked with 5% non-fat milk for 1 h at room temperature, followed by incubation with antibodies directed against RPE65 (ABCAm), E-cadherin (Proteintech), ZO-1 (Invitrogen), a-SMA (Proteintech), FN (ABCAm), Ncadherin (Proteintech), GAPDH (d 1:1000 in Tris-buffered saline containing 0.1% Tween-20 (TBST). PVDF membranes were washed three times in TBST and incubated for 2 h with secondary antibodies at room temperature. The protein was visualized using enhanced chemiluminescence (ECL).
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6

Immunofluorescence Analysis of PRDX2, SM22α, and α-SMA

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Immunofluorescence staining was analyzed using an Olympus microscope. The expression and distribution of PRDX2 (1:100; Abcam, USA and Proteintech, China), SM22α (1:100; Proteintech, China), and α-smooth muscle actin (α-SMA, 1:200; Proteintech, China) were detected. Moreover, the osteopontin (OPN, 1:100; Abcam, USA) was evaluated to mark the phenotype switching of the CAVSMCs. The nuclei were stained with 0.5 μg/ml 4′,6-diamidino-2-phenylindole (DAPI; Solarbio, China).
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7

Quantifying Atrial Fibrosis and Fibroblast Markers

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After measurements were taken, the heart was quickly removed and washed with PBS. The atrial tissue was isolated and fixed with 4% paraformaldehyde, embedded in paraffin and sectioned into 5 microns slices. The cultured fibroblasts were fixed with 4% paraformaldehyde for 15 min, permeabilized with 0.2% Triton X-100 for 20 min, and finally blocked with 3% BSA for 60 min at room temperature.
Atrial fibrosis was quantified by analysis of images of Masson's trichrome-stained samples. The atrial samples were incubated with primary antibodies against SK4 (Abcam, USA), α-SMA (Proteintech Group Inc., China), and DDR-2 (Santa Cruz Biotechnology, USA) and subsequently with secondary antibodies FITC-conjugated AffiniPure goat anti-rat IgG and CY3-conjugated AffiniPure goat anti-rabbit IgG (ASPEN Biotechnology, China). Fibroblasts were incubated with primary antibodies against SK4 and α-SMA and subsequently with secondary antibodies CY3-conjugated AffiniPure goat anti-rabbit IgG and FITC-conjugated AffiniPure goat anti-rat IgG (ASPEN Biotechnology, China). The nucleus was stained with DAPI. The results were analyzed by Image-Pro Plus 6.0 software (Media Cybernetics, USA). Three visual fields in each sample were assessed randomly at 400× magnification.
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8

Comprehensive Histological Analysis of Bone

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Following micro-CT test, the specimens were prepared (decalcified, dehydrated, paraffin-embedded, and sectioned). H&E and Masson's trichrome staining were performed. Immunohistochemical (IHC) staining was performed to detect CD206 (1:1000, Abcam), iNOS (1:1000, Abcam), CD31 (1:5000, Abcam), α-SMA (1:1000, Proteintech), TNF-α (1:100, Affinity), and IL-1β (1:200, Abcam). Tissue slices were captured using an Aperio AT2 scanning system (Leica, Germany). Immunofluorescence staining was performed using CGRP (1:100, Abcam), β3-Tubulin (1:200, Cell Signaling Technology), OCN (1:100, Santa Cruz Biotechnology) and collagen I (1:500, Thermo Fisher). Images were taken using CLSM. The quantitative analysis was performed using Image J software.
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9

Inflammasome Pathway Protein Detection

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HDAC6 (Cell Signaling Technology Cat# 7612, RRID:AB_10889735; 1:1000 in WB, 1:100 in IHC), NLRP3 (Cell Signaling Technology Cat# 13158, RRID:AB_2798134; 1:1000 in WB), NLRP3 (AdipoGen Cat# AG-20B-0014, RRID:AB_2490202; 1:1000 in WB), Caspase-1 (Proteintech Cat# 22915-1-AP, RRID:AB_2876874; 1:3000 in WB), Caspase-1 (AdipoGen Cat# AG-20B-0042, RRID:AB_2490248; 1: 1000 in WB), Cleaved N-terminal GSDMD (Abcam Cat# ab215203, RRID not available; 1:500 in WB), ASC (Santa Cruz Biotechnology Cat# sc-514414, RRID:AB_2737351; 1:500 in WB), α-Tubulin (Proteintech Cat# 11224-1-AP, RRID:AB_2210206; 1:5000 in WB), β-Tubulin (Proteintech Cat# 10068-1-AP, RRID:AB_2303998; 1:5000 in WB), acetylated α-Tubulin (Lys40) (Proteintech Cat# 66200-1-Ig, RRID:AB_2722562; 1:1000 in WB), α-SMA (Proteintech Cat# 14395-1-AP, RRID:AB_2223009; 1:2000 in WB, 1:300 in IHC), Col1a (Cell Signaling Technology Cat# 72026, RRID:AB_2904565; 1:2000 in WB, 1:300 in IHC), Goat anti-mouse IgG (H + L), HRP conjugate (SA00001-1, Proteintech), Goat anti-rabbit IgG (H + L), HRP conjugate (SA00001-2, Proteintech), Donkey anti-rabbit IgG (H + L), Alexa Fluor 488 (A-21206, ThermoFisher), Donkey anti-mouse IgG (H + L), Alexa Fluor Plus 555 (A32773, ThermoFisher).
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10

Western Blot Analysis of Protein Expression

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Protein samples were separated by 8%, 10%, or 12% sodium dodecyl sulfate-polyacrylamide gels (SDS-PAGE) and then transferred onto PVDF membranes (EMD Millipore, Burlington, MA, USA). After being blocked with 5% non-fat milk, the membranes were incubated with the following primary antibodies at 4°C overnight: α-tubulin (GeneTex, Irvine, CA, USA), collagen I (GeneTex), α-SMA (Proteintech, Chicago, IL, USA), TGF-β (Cell signaling technology, Danvers, MA, USA), TNF-α (GeneTex), NLRP3 (Proteintech), caspase-1 (Proteintech), IL-18 (Proteintech), IL-1β (Proteintech), caspase-3 (GeneTex), caspase-8 (GeneTex), caspase-9 (GeneTex), and BCL-2 (GeneTex). Membranes were then incubated with HRP-conjugated mouse anti-IgG (EMD Millipore) or HRP-conjugated rabbit anti-IgG (EMD Millipore) secondary antibodies for 1 h. Membranes were developed using ECL detection reagent (EMD Millipore). Relative protein levels were quantified using Image J (Version 1.46, National Institute of Health, Bethesda, MD, USA), and protein densitometry were expressed relative to that of α-tubulin.
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