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13 protocols using gct premier

1

High-Resolution NMR and Mass Spectrometry

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1H NMR and 13C{1H} NMR high-resolution nuclear magnetic resonance spectra were recorded on a Varian Mercury Plus 400 (400 MHz/101 MHz) or a Varian Unity Inova 500 (500 MHz/126 MHz) spectrometer at room temperature. Chemical shifts are reported relative to TMS (δ 0.00) or CDCl3 (δ 7.26) for 1H NMR and CDCl3 (δ 77.2) for 13C{1H} NMR. IR spectra were recorded as thin films (PerkinElmer Spectrum 100 FT-IR Spectrometer). High-resolution mass spectra were obtained on a Thermo-Electron LTQ-FT 7T Fourier transform ion cyclotron resonance (FT-ICR) spectrometer with an atmospheric pressure chemical ionization (APCI) source with direct infusion run in positive ion mode at 5 kV. Additional accurate mass measurement analyses were conducted on either a Waters GCT Premier, time-of-flight, GCMS with electron ionization (EI), or an LCT Premier XE, time-of-flight, LCMS with electrospray ionization (ESI). Samples were taken up in a suitable solvent for analysis. The signals were mass measured against an internal lock mass reference of perfluorotributylamine (PFTBA) for EI-GCMS, and leucine enkephalin for ESI–LCMS. Waters software calibrates the instruments, and reports measurements, by use of neutral atomic masses. The mass of the electron is not included.
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2

NMR Spectroscopy Characterization Protocol

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1H, 13C{1H} and 31P{1H} NMR spectra were recorded on Bruker AV400PAS and AV300PAS (Bruker, Karlsruhe, Germany) instruments. 1H and 13C chemical shifts (δ, ppm) were measured relative to residual resonances of solvents. High-resolution mass spectra were recorded using GCT Premier (Waters, Milford, MA, USA) and UPLC Xevo G2 Q TOF (Waters, Milford, MA, USA) mass spectrometers for chemical ionization and electrospray ionization, respectively.
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3

Synthesis and Characterization of Azi-medetomidine

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Reagents and solvents were all acquired from commercial sources. 1 (link)H and 13C NMR spectra were obtained on a Bruker DMX 500 MHz nuclear magnetic resonance spectrometer and 19F NMR spectra were obtained on a Bruker DMX 360 MHz nuclear magnetic resonance spectrometer. Spectra for 5-(1-(3-(3-(trifluoromethyl)-3H-diazirin-3-yl)phenyl)ethyl)-1H-imidazole (Azi-medetomidine, 1) are reported in the supporting information. Accurate mass measurement analyses were conducted on either a Waters GCT Premier, time-of-flight, GCMS with electron ionization (EI), or an LCT Premier XE, time-of-flight, LCMS with electrospray ionization (ESI). Samples were taken up in a suitable solvent for analysis. The signals were mass measured against an internal lock mass reference of perfluorotributylamine (PFTBA) for EI-GCMS, and leucine enkephalin for ESI-LCMS. Waters Masslynx software calibrates the instruments, and reports measurements, by use of neutral atomic masses. The mass of the electron is not included.
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4

Synthetic and Analytical Procedures for Compounds A and B

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Unless stated otherwise, solvents were evaporated at 40 °C/2 kPa and compounds were dried at 13 Pa. Analytical TLC was performed on silica gel 60 F254 plates (Merck KGaA, Darmstadt, Germany). The NMR spectra were measured on an FT NMR spectrometer (Bruker Avance II 500) in DMSO-d6 (1H at 500 MHz and 13C at 125.7 MHz), referenced to the residual solvent signal, chemical shift are expressed in parts per million, ppm, and interaction constants J in Hz. GC/MS analyses were measured using a 6,890 N gas chromatograph (Agilent, Santa Clara, CA, USA) attached to a quadrupole mass detector. A HP-5 ms capillary (30 m × 0.25 mm; 0.25 μm; Agilent) was used for the analyses. The carrier gas was helium with a flow rate of 1 mL/min. The EI mass spectra were measured on a GCT Premier (Waters) OA-TOF GC mass spectrometer. The elemental composition of the prepared compounds was determined using a PE 2400 Series II CHNS/O Elemental Analyzer (Perkin Elmer, USA, 1999). Melting points were determined on a Stuart SMP3 Melting Point Apparatus and are uncorrected. Compounds A12 and B12 were prepared according to the literature (Schostarez, 1992 ). Compounds A1 and B1 were purchased from Sigma-Aldrich.
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5

Oxidation of P450cam and CYP101D1

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With P450cam, the addition of oxidized Pdx to oxy-P450cam results in the formation of 0.5 equiv of product.1 (link) Similar experiments were performed with CYP101D. Oxidized Arx (40 μM) was added to 20 μM oxy-CYP101D1 in a total volume of 1.5 mL. After 30 min, the solution was extracted with 750 μL of dichloromethane and analyzed by GCT Premier (TOF from Waters) as previously described.14 (link)
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6

NMR and Mass Spectrometry Analysis

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All chemicals are commercially available
and used as received without further purification. NMR spectra were
taken on a Bruker AV400 at room temperature. Mass spectra (HRMS) were
obtained in Waters GCT Premier. Fluorescence spectra and UV–vis
spectra were recorded at room temperature on an Agilent Cary Eclipse
spectrofluorophotometer and PerkinElmer Lambda 365, respectively.
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7

Spectroscopic Characterization of Pyrimidine Compounds

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IR spectra were recorded using a Bruker Alpha Platinum ATR FTIR spectrometer; frequencies are reported in cm−1. NMR spectra: Varian Unity Inova 400 (298 K) 5 mm tubes, TMS as internal standard; 1H NMR (400 MHz) and 13C NMR (100 MHz) spectra are reported in ppm; 1H- and 13C-resonances were assigned using 1H,1H-; and 1H,13C-correlation spectra and are numbered as given in the formulas. Signal multiplicities are abbreviated as follows: br broad, d doublet, dd doublet of doublets, ddd doublet of doublet of doublets, m multiplet, s singlet, t triplet, td triplet of doublets; resonances marked with a single quote belong to the pyrimidine substituent of the compounds (Scheme 1). HRMS: GCT-Premier, Waters (EI, 70 eV). Materials: column chromatography (CC): aluminium oxide 90 (neutral, Merck, Rahway, NJ, USA), aluminium oxide 60 (pH: 9.5, Merck), silica gel 60 (Merck 70–230 mesh, pore-diameter 60 Å), thin-layer chromatography (TLC): TLC plates silica gel 60 F254 (Merck), aluminium oxide 60 F254 (neutral, Merck).
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8

Comprehensive Analytical Techniques for Chemical Characterization

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General chemical procedures:
NMR spectra were measured on a Bruker AVANCE II-600 and/or Bruker
AVANCE II-500 instruments (600.1 or 500.0 MHz for 1H and
150.9 or 125.7 MHz for 13C) in hexadeuterodimethyl sulfoxide
and referenced to the solvent signal (δ 2.50 and 39.70, respectively).
Mass spectra were measured on a LTQ Orbitrap XL (Thermo Fischer Scientific)
using electrospray ionization (ESI) and a GCT Premier (Waters) using
EI. The elemental analyses were obtained on a Perkin Elmer CHN Analyzer
2400, Series II Sys (PerkinElmer), and X-ray fluorescence spectrometer
SPECTRO iQ II (SPECTRO Analytical Instruments, Germany). Column chromatography
and thin-layer chromatography (TLC) were performed using Silica gel
60 (Fluka) and Silufol Silica gel 60 F254 foils (Merck),
respectively. The purity of newly synthesized compounds was >95%,
confirmed by UPLC-MS. Solvents were evaporated at 2 kPa and a bath
temperature of 30–60 °C. The compounds were dried at 13
Pa and 50 °C.
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9

Mass Spectrometric Sample Analysis

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For mass spectrometry, samples were injected on DSQ II mass spectrometer (Thermo Fisher Scientific, Waltham, MA, USA) equipped with electron impact (EI) and chemical ionization (DCI NH3) sources and UPLC Xevo G2 Q TOF (Waters) and GCT Premier (Waters) for high resolution mass spectrometry.
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10

Metal Hydroxide Characterization via UV-VIS and GC-MS

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The obtained metal hydroxides from above were dispersed uniformly into 1 mL H2O in EP tube, by vigorous vortexing and sonication (10 min). Regarding the suspending liquid, 250 μL was transferred into a new EP tube for centrifugation at 12,000 rpm for 10 min. The supernatant was removed, and the precipitate was added by 1 mL 5 mM TCP dissolved in 75% methanol/25% H2O solution. After uniformly mixing by vigorous vortexing, 10 min of reaction time was allowed before the reaction mixture was centrifuged at 12,000 rpm for 10 min. A portion of the supernatant was transferred into a cuvette for direct UV-VIS characterization or Folin–Denis reaction. The remaining supernatant was used for gas chromatography–mass spectrometry (GC-MS, GCT Premier, Waters Corp., Manchester, UK) characterization.
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