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21 protocols using sc 2048

1

Western Blot Analysis of Protein Expression

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The cells or protein samples were solubilized with SDS loading buffer and separated with 12% SDS/PAGE gel. After that, the proteins in the gel were transferred onto PVDF membranes. After blocked by 10% fat-free milk for 20 min at room temperature, the membranes were incubated by antibodies (GFP: M20004, 1:1000; Cpt2: 26555-1-AP, 1:1000; albumin: ab207327, 1:1000; β-actin: TA-09, 1:1000; Flag: ab49763, 1:1000; Hsp90α: ab2928, 1:1000; Hsp90β: ab203085, 1:1000; Cox4: ab14744, 1:1000; Hsp70: 10995-1-AP, 1:1000; Hsc70: 10654-1-AP, 1:1000; Acsl1: 13989-1-AP, 1:1000; Fh: 11375-1-AP, 1:1000; ubiquitin: 14094 S, 1:1000; Myc: M20002, 1:1000; Sdha: 11998 T, 1:1000; Ndufv1: 11238-1-AP, 1:1000; Uqcrc1: 21705-1-AP, 1:1000; ATP8: 26723-1-AP, 1:1000. These antibodies were bought from Proteintech, Cell Signaling, Abcam, Abmart and ZSGB-Bio.) for 2 h at room temperature. After that, the membranes were washed by TBST (tween-80, 0.01%) for 6 min and for 3 times. Then, the membranes were incubated by secondary antibodies (anti-rabbit IgG, 7074, 1:2000; anti-mouse IgG, 7076, 1:2000. Cell Signaling). After that, the membranes were washed by TBST for 6 min and for 3 times. Finally, drop the luminal reagent (sc-2048, Santa cruz) on the membranes and expose them by the equipment (Tanon, 5200) for suitable time.
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2

Western Blot Analysis of Apoptosis Markers

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The collected cells were lysed with a buffer containing 1% Triton X-100, 150 mM NaCl, 50 mM Tris-HCl (pH 7.5), 0.1% sodium dodecyl sulfate (SDS), 1% Nonidet P-40, and 1 mM PMSF by vortexing. The cell suspensions were incubated on the ice for 3 min and centrifuged at 13,000 rpm at 4°C for 10 min. The protein samples were electrophoresed on a 10% SDS-PAGE and transferred to a nitrocellulose membrane (Protran™; Whatman, Maidstone, UK). After incubation with 5% skim milk in TBST (20 mM Tris–HCl (pH 7.6), 137 mM NaCl and 0.1% Tween-20) for 1 h, the membrane was washed 3 times with TBST and incubated with antibodies against PARP-1 (1:1000, sc-56197, Santa Cruz), Caspase 3 (1:1000, #9662, Cell Signaling), Bax (1:500, #2772, Cell Signaling), Cytochrome C (1:1000, sc-13156, Santa Cruz), Bcl-w (1:500, sc-11422, Santa Cruz), Bcl-2 (1:500, sc-7382, Santa Cruz), p21 (1:1000, sc-6246, Santa Cruz), β-actin (1:1000, sc-47778, Santa Cruz), KAT5 (1:1000, sc-5725, Santa Cruz) at room temperature. Membranes were washed three times for 10 min with TBST and incubated with a 1:5000 dilution of horseradish peroxidase-conjugated anti-mouse or anti-rabbit antibodies for 1 h. Blots were washed with TBST three times and developed with the Western blotting luminol reagent (sc-2048, Santa Cruz) according to the manufacturer’s protocols.
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3

Western Blot Analysis of Cellular Proteins

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The cells were washed in phosphate-buffered saline (PBS) and lysis was carried out in the radioimmunoprecipitation assay (RIPA) buffer on ice. Lysates were centrifuged to obtain the supernatants and the total protein concentrations were determined. These were then transferred to the nitrocellulose membranes, followed by incubation with anti-ATF2 antibody (1:500), anti-ERK1/2 antibody (1:500), anti-phospho-ERK1/2T202 antibody (1:500), anti-HDAC2 antibody (1:500), anti-hemagglutinin (HA) antibody (1:500), anti-green fluorescent protein (GFP) antibody (1:500), anti-histone (His) H3 antibody (1:500), anti-p300 antibody (1:500), anti-MDM2 antibody (1:500), and anti-β-actin antibody (1:1,000) at 4oC overnight. All antibodies were purchased from Abcam (Abcam, Cambridge, UK). After this, incubation with secondary horseradish peroxidase (HRP)-conjugated anti-mouse antibodies was conducted for 1 h. Protein bands were illuminated using the luminal agent SC-2048 (Santa Cruz Biotechnology, California, USA) according to the manufacturer’s instructions.
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4

Western Blot Analysis of SULT2B1b

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Western blot analysis was performed as described previously.21 (link) Briefly, tumor specimens were prepared in lysis buffer (Tris-HCl (20 mM), pH 7.4, NaCl (150 mM), glycerol (10%), Nonidet P-40 (0.2%), EDTA (1 mM), EGTA (1 mM), PMSF (1 mM), NaF (10 mM), aprotinin (5 mg/ml), leupeptin (20 mM), and sodium orthovanadate (1 mM)) and centrifuged at 12 000 g for 30 min. Protein concentrations were measured using the BCA assay. Immunoblotting was performed using a primary antibody specific for SULT2B1b (Abnova, H00006820-B01P, Taiwan) and immunocomplexes were incubated with an anti-mouse horseradish-peroxidase-conjugated secondary antibody, and then detected using an enhanced chemiluminescence kit (Santa Cruz Biotechnology, sc-2048, Japan). β-actin was used as a loading control (Santa Cruz Biotechnology, sc-47778).
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5

Western Blot Analysis of Apoptosis Markers

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Total proteins were isolated using radioimmunoprecipitation lysis buffer (Beyotime) and loaded onto SDS-PAGE gel for separation and then transferred to PVDF membranes (BioRad, 1,620,177). After that, the membranes were blocked with skim milk for 2 h, incubated with primary antibodies against MYRF (1:1000; Abcam, ab227721), cleaved-Caspase-3 (1:1000; Abcam, ab32499), Bax (1:1000; Abcam, ab182733), BCL2 (1:1000; Abcam, ab182858), and GAPDH (1:1000; Abcam, ab9485) at 4°C overnight. Then an enhanced chemiluminescence kit (Santa Cruz, sc-2048) was employed to detect the protein signals following another 2 h incubation with HPR-conjugated secondary antibody. Protein levels were quantified using Image-Pro® Plus software (Media Cybernetics) [18 (link)].
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6

Liver Protein Extraction and Western Blot

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Liver tissues were homogenized in lysis buffer (50 mmol/L Tris‐HCl [pH 7.4], 150 mmol/L NaCl, 5 mmol/L EDTA, 1% (v/v) Nonidet P‐40, 0.1% (w/v) sodium dodecyl sulfate, 0.5% [w/v] sodium deoxycholate) including protease inhibitor cocktail (P3100‐010, GenDEPOT, TX), incubated on ice for 20 min, and centrifuged for 20 min at 13,000 xg at 4°C. Approximately 20 μg of total protein was subjected to 16% SDS‐PAGE and transferred to nitrocellulose blotting membrane. The membranes were blocked with 5% (w/v) skim milk in TBS‐T buffer (140 mmol/L NaCl, 25 mmol/L Tris‐HCl [pH 7.4], 2.7 mmol/L KCl, 0.05% [v/v] Tween 20) and incubated with the antibodies for UQCRH (ab134949, Abcam, Cambridge, UK) and α‐tubulin (sc‐5286, SantaCruz, CA) overnight at 4°C. After washing three times with TBS‐T, the membranes were incubated with a horseradish peroxidase‐conjugated secondary antibody (A120‐101P and A90‐116P, Bethyl Laboratories, TX) at room temperature for 1 h. The membrane was reacted with western blotting luminol reagent (sc‐2048, SantaCruz).
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7

Western Blotting of Liver Protein Targets

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Frozen liver tissue samples were homogenized in RIPA buffer with a proteinase and phosphatase inhibitor cocktail (Roche) on ice. Protein concentrations were determined with the Bio-Rad Protein Assay Kit (Bio-Rad, Hercules, CA, USA). Aliquots of 20 μg denatured protein samples were separated by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to 0.20 μM nitrocellulose membranes (Invitrogen). After being blocked with 5% non-fat milk powder, the blots were transferred to a 4°C refrigerator for 1.5 hours. Membranes were incubated with the following primary antibodies: rabbit polyclonal c-Met at 1: 1000, mouse monoclonal β-catenin at 1: 2000 and rabbit polyclonal GAPDH at 1: 2000 (Cell Signaling, Danvers, MA, USA;5174) on shaker at 4°C overnight, followed by incubation with secondary horseradish peroxidase (HRP)-conjugated antibody (Santa Cruz Biotechnology) diluted 1: 5000 at room temperature, for 2 hours. The blots were developed by the enhanced chemiluminescence (ECL) method (Santa Cruz Biotechnology, Dallas, TX, USA; SC-2048).
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8

Western Blot Analysis of Cellular Proteins

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The total cellular extracts of LECs were prepared in ice-cold radioimmune precipitation buffer (RIPA buffer), and Western analysis was carried out as described previously [7 (link),70 (link),71 (link),72 (link)]. The membranes were probed with anti-Nrf2 (sc-722, Santa Cruz Biotechnology, Dallas, TX, USA), anti-Nrf2 (ab62352, Abcam®, Cambridge, MA, USA), Anti-Klf9 (ab177158, Abcam®, Cambridge, MA, USA), Anti-Klf9 (sc-12996, Santa Cruz Biotechnology, Dallas, TX, USA), Anti-Prdx6 antibody (LF-PA0011, Ab Frontier, South Korea), Tubulin (ab44928, Abcam®, Cambridge, MA, USA) or β-actin (A2066, Sigma-Aldrich, St. Louis, MO, USA) or Lamin B1 (ab133741, Abcam®, Cambridge, MA, USA) as an internal control to monitor levels of protein expressions. After secondary antibody (sc-2354 and sc-2768, Santa Cruz Biotechnology, Dallas, TX, USA) incubation, protein bands were visualized by incubating the membrane with luminol reagent (sc-2048; Santa Cruz Biotechnology, Dallas, TX, USA). Finally, images (bands) were recorded with a FUJIFILM-LAS-4000 luminescent image analyzer (FUJIFILM Medical Systems Inc., Hanover Park, IL, USA).
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9

Quantitative Analysis of 5HT2C Receptor

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Protein was extracted from the right cortex and striatum of each rat (n=6), and the protein concentration was determined using BSA as the standard. Samples containing 40 μg of protein were added into the 10% polyacrylamide slab gel. After the protein was transferred to nitrocellulose membranes, the membranes were blocked by 5% skimmed milk powder in TBS-T for 60 minutes and then incubated with the primary antibody (5HT2C: LS-B11334, 1: 1000, LSBIO, Seattle, WA, USA) and GAPDH (ab8245, 1: 10000, Abcam, Cambridge, MA, USA) at 23±2°C overnight. After washing the membrane, the specific binding was detected by goat-anti-rabbit or goat-anti-mouse horseradish peroxidase-conjugated secondary antibodies (5HT2C: ZB-2301, 1: 2000, ZSGB-Bio, Beijing, China; GAPDH: ZB-2305, 1: 5000, ZSGB-Bio, Beijing, China). The staining was visualized using the ECL detection system (SC-2048, Santa Cruz, CA, USA). Images were acquired with an electrophoresis gel imaging analysis system. Band density was measured using Quantity One software (Bio-Rad Laboratories Inc., Hercules, CA, USA).
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10

Endothelial Cell eNOS Dimerization Assay

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Human umbilical vein endothelial cells (HUVECs) were purchased from ATCC cell lines (American Type Culture Collection - Manassas, VA – United States) and cultured in growth medium (Dulbecco’s modified eagle’s medium – DMEM, Vitrocell, 00025) supplemented with fetal bovine serum (FBS) 10% from Gibco (12657029, South America) and used at passages 4–6. After serum deprivation in culture medium for 12 h, confluent HUVECs were treated with dextrin (10 mM) for 60 min or not (control) in the presence of BH4 (100 μM, for 30 min), L-arginine (1 mM, for 30 min), or BH4 plus L-arginine. Then, the cultured cells were lysed on ice in RIPA buffer supplemented with a cocktail of protease and phosphatase inhibitors, and the lysates were placed under non-denaturing conditions. The samples were prepared with 4x Laemmli sample buffer (Biorad, 1610747) plus betamercaptoethanol 10% (Biorad, 1610710) and were loaded on polyacrylamide gel 8%. During electrophoresis and protein transfer to the nitrocellulose membrane, the buffers were placed in an ice-water bath, and the whole apparatus was kept at 4 °C. The eNOS monomer and dimer forms were incubated with antibody against eNOS (1:1000, BD Bioscience, 610296) and α-tubulin or GAPDH were used to normalize the results. The bands were detected by a chemiluminescence substrate (Santa Cruz, SC-2048).
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