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59 protocols using nano glo

1

CPEB Isoforms Evaluation in 293T Cells

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Different CPEB isoforms and paralogs were inserted into N2H plasmids (Choi et al., 2019 (link)) (pDEST-N2H-N1, -N2, -C1 or -C2 kindly received from Yves Jacob, https://www.addgene.org/Marc_Vidal/) using the Gateway LR reaction. For the compilation assay 2ug DNA (1:1 ratio of plasmids) was transfected into 293T cells in 6-well plates using Lipofectamine 2000 reagent. after 24 hours cells were collected and plated in 96 well plates and drugs were added after 8 hours for overall 12 hours of treatment. Luminescence was measured using Nano-glo (Promega) and viability (that was not affected) was measured using cell-titer glo (Promega). For the sucrose gradient, cells transfected and treated for 16 hours with the differentHsp90 inhibitor, were collected and lysed (50mM Tris 7.5, 1mM EDTA, 150mM NaCl, 0.5% NaDOC, 1% NP40) and loaded on a 5%−30% w/v linear sucrose gradient containing 20mM HEPES-KOH, pH 7.4,5mM MgCl2,100mM KCl, 2mM DTT. Gradients were centrifuged for 16hr at 30,000 rpm and 4°C and then fractionated by upward displacement using a Biocomp Gradient Station. Luminescence of each fraction was detected in 384 plates using Nano-glo (Promega).
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2

Quantifying Parasite Lysis in P. falciparum

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P. falciparum RhopH2-HAglmS and 3D7 infected erythrocytes expressing Hyp1-Nluc were treated with 0–1 mM GlcN when at the trophozoite stage (28–36 hours post invasion) and were then grown for a further 48 h until the parasites were trophozoites again. After washing the parasitized erythrocytes twice in PBS, 10 μL of cell suspension (at 1% hematocrit and 1% parasitemia) were dispensed in triplicate into a white 96 well microplate and loaded into a Clariostar luminometer (BMG Labtech). To each well, 40 μL of sorbitol lysis buffer containing the NanoGlo (Promega) substrate (280 mM sorbitol, 20 mM Na-HEPES, 0.1 mg/ml BSA, pH 7.4, Nano-Glo (1:1000 dilution) was added and the relative light units (RLU) measured every 3 min for up to 1 h with gain set to 2500. The RLU increased over time as more cells lysed and released nanoluciferase. The rate of increase in RLU per min (RLU/min) was determined with GraphPad Prism software52 (link). A value of 100% lysis is defined as the RLU/min of infected erythrocytes not treated with GlcN (full NPP function) in sorbitol lysis buffer. A value of 0% lysis is defined as the RLU/min of 10 µL parasites in 40 µL of non-lytic PBS containing NanoGlo substrate (1:1000).
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3

Dynamic monitoring of GPCR-arrestin interactions

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NanoBiT assay is based on complementation of large and small bit fused to different proteins that yield functional luciferase when the two proteins interact. This complementation is reversible [33 (link)], which allows the observation of in-cell interactions in real time. The cells were used after no more than ten passages. 24 h post-transfection, cells expressing similar levels of receptors and arrestins were transferred into a 96-well flat bottom plate and allowed to adhere in regular culture medium for 4 h. Then the cells were serum starved overnight (16 h) in culture medium without phenol red. 48 h post-transfection, luciferase substrate nanoGlo (N1120; Promega, Fitchburg, WI) was added according to the manufacturer’s instructions and the total luminescence was measured for 20 min using Synergy Neo plate reader (BioTek, New Castle, DE). Then agonists (10 μM carbachol (carbamoylcholine) for M2R or 10 μM isoproterenol for β2AR) were added and the luminescence was recorded for 40 min. The expression of arrestin-3 and GPCRs was determined by western blot using anti-arrestin F431 [32 ] anti-HA (#3724, Cell signaling Technology, Danvers, MA) antibodies.
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4

Quantifying CD271 Promoter Activity

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The CD271 promoter region was amplified from the genome of HPCM2 cells using polymerase chain reaction and cloned into the pNL1.1-Nluc-Neo vector (Promega). 293 T cells were transfected with the plasmids using FugeneHD (Promega) according to manufacturer instructions, and 2 days after transfection, cells were lysed with Nanoglo (Promega), and luminescence was measured using a Synergy H1 system (Agilent Technologies). The pGL4.10[luc2] vector (Promega) was also transfected along with pNL1.1-Nluc-Neo for normalization.
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5

Emission Spectral Analysis of Nluc Fusions

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Emission spectral scans of the HEK-293T cells expressing recombinant Nluc fusions were performed in 384-well F bottom Clear plates using a SpectraMax M5 fluorescence microplate reader (Molecular Devices, CA), with Dulbecco’s modified Eagle’s medium without phenol red, supplemented with furimazine and the assay substrate Nano-Glo at 100-fold dilution (Promega). Emission spectra were recorded from 380 to 650 nm using an integration time of 500 ms with 5-nm step increments. All spectra were normalized to the luminescence value at the emission maximum (449 nm) of Nluc.
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6

Quantifying SARS-CoV-2 Spike RBD Binding

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Transiently transfected HEK293T cells were washed and maintained in complete HBSS media (ThermoFisher) supplemented with 0.035% Sodium Bicarbonate (ThermoFisher) and 0.38% HEPES. HEK293T cells were then co-incubated for 2 hours with RBM-derived peptides (0.5, 5 or 50 μM, final concentrations) and 0.1 μM (final concentration) His-tagged SARS-CoV-2 Spike protein RBD (GenScript) or vehicle. Following 2-hour incubation period, HEK293T cells were further incubated for 10 minutes at 37°C with the nLuc substrate Nanoglo (Promega) prior to measurement of total luminescence with the BMG Clariostar lab tech plate reader. The internalisation of membrane bound nLuc-ACE2, induced by SRBD protein, is indirectly detected by a reduction in luminescence signal.
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7

Assessing Transcriptional Activity in Cells

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Cells were resuspended in the growth medium at 100,000 cells/mL. 25 μL of media was then added to each well in a white, 384-well tissue culture-treated plate (Corning). For the XBP1s luciferase reporter, the plate was assayed using NanoGLO (Promega) following manufacturer’s instructions. For the UPRE reporter, firefly luciferase activity was measured after treatment.
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8

Quantifying Nanoluciferase in Diverse Samples

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Nluc was quantified in six types of samples: EVs, SEC eluate, plate‐bound EVs, cell lysate, mouse plasma and tissue lysate. To measure Nluc in EVs, 5 μl of EVs were added into white‐walled 96‐well plates along with 20 μl of Triton X‐100 solution. The plate was shaken horizontally at 500 rpm for 5 min. For plate‐bound EVs and cell lysate, 25 μl of the lysate were added to the plate. For SEC eluate, 25 μl of samples were lysed with equal volume of Triton‐X solution. For mouse plasma, 5 μl of plasma was lysed with 20 μl Triton X‐100 solution. Tissue lysate was first diluted by 10‐fold and 25 μl of the diluted samples were added. GloMax 96 Microplate Luminometer (Promega, US) was used to automatically inject the substrate Nano‐Glo (Promega; N1130) at 25 μl per well and measure luminescence intensity.
To detect HiBiT in EVs, 10 μl of samples was added into white‐walled 96‐well plates and lysed with 10 μl Triton X‐100 solution. Then, 20 μl of HiBiT Lytic Detection mixture (Promega; N3040) was added to each well. After incubation at room temperature under horizontal shaking at 500 RPM for 10 min, the plate was immediately measured.
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9

Dual-Luciferase and Fluorescent Assays

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pGL4.20, pNL1.1 and pNL1.2-transfected cells were lysed after stimulation using Cell Culture Lysis Reagent (CCLR; Promega). Nano-Glo (Promega) was used to measure luminescence of the pNL1.1 and pNL1.2 transfected cells. Luminescence of pGL4.20 transfected cells was determined after addition of Luciferase Assay Reagent (Promega). Nano-Glo and Luciferase Assay Reagent were added to 30 μL lysate at 1:1 and 1:2 ratio, respectively. Medium samples were taken from cells expressing the pGLuc-basic plasmid. The amount of luminescence was assessed after the addition of BioLux GLuc Substrate (NEB) in a 1:1 ratio to 30 µL medium sample. All luminescent measurements were performed with the Tristar2 LB942 (Berthold Technologies, Bad Wildbad, Germany). pDD-tdTomato expressing-cells were treated with 1 μM shield1 (kindly provided by Dr. Bongers, Radboud University) at the start of stimulation to stabilize the newly produced DD-tdTomato protein. Fluorescent measurements were carried out with a CLARIOstar monochromator (BMG Labtech, Ortenberg, Germany) by exciting the cells at 550 nm and measuring emission at 590 nm. 20 μL of total cell lysate was used for β-Gal colorimetric quantification to correct for differences in transfection efficiency (Invitrogen). Absorbance was determined using a Multiskan FC Microplate Photometer (ThermoFisher Scientific) at 405 nm.
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10

Nanoluciferase Reporter Assay in SH-SY5Y Cells

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SH-SY5Y cells were seeded on 6-well culture plates at 3 × 105 cells per well. 24 h post seeding, each well was transfected using 7.5 μL FUGENE HD (Promega) and 1.25 μg nanoluciferase reporter plasmid along with 1.25 μg pGL4.13 (internal transfection control that encodes firefly luciferase [FFluc]) in 300 μL of OptiMEM (Invitrogen). Transfections of differentiated cells were performed on day 5 in RA supplemented media. Cultures were allowed to grow for 24 h after transfection. Cells were lysed in 250 μL Glo Lysis Buffer (Promega) for 5 min at room temperature. 50 μL lysate was mixed with 50 μL prepared Nano-GLO or ONE-Glo (Promega) for 2 min, and bioluminescence was detected using a GloMax® 96 Microplate Luminometer. Nanoluciferase signal was normalized to FFluc signal in each sample. pcDNA 3.1 encoding nLuc the AUG start codon mutated to a GGG (GGG-nanoLuc) was run in parallel with each experimental nLuc plasmid and subjected to both conditions to serve as a control for normalization.
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