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4 protocols using filtermat b

1

Radioligand Binding Assay for Histamine

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The membrane suspension, 3H-histamine (PerkinElmer, USA), and cold ligand (histamine) were diluted with the assay buffer (20 mM HEPES pH7.5, 150 mM NaCl). Briefly, 100 μL of the reaction mixture was dispensed in triplicate in a 96-well microplate. Membrane proteins (300 μg) were added to each well. The final concentrations of 3H-histamine were 200, 100, 50, 25, 12.5, 6.25, and 3.13 nM. To achieve non-specific binding, the experiment was performed in the presence of a cold ligand at a 1000-fold concentration of the hot ligand. The reaction mixture was incubated at room temperature (22–24 °C) for 1 h. The membrane was harvested on a glass fiber Filtermat B (PerkinElmer, USA) filter paper presoaked in 0.3% polyethylene imine using a FilterMate cell harvester (PerkinElmer, USA). The filter paper was washed with distilled water and dried. The solid scintillator, MeltiLex B/HS (PerkinElmer, USA), was melted on the filter paper. Radioactivity was detected using a Microbeta 2 system (PerkinElmer, USA). Specific binding was determined by subtracting nonspecific binding from total binding.
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2

Quantifying Protein Synthesis Dynamics

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[35]S-labeled methionine and [35]S-labeled cysteine incorporation in nascent proteins was measured according to the manufacturer’s instruction (EasyTag EXPRESS35S Protein Labeling Mix, Perkin Elmer, Upplands Väsby, Sweden). Briefly, 105 cells were seeded per well in six well plates, allowed to attach overnight and treated in methionine and cysteine free DMEM (Gibco Thermo Fisher) with RITA in presence or absence of ISRIB at indicated concentrations for 4 h. Next, cells were incubated for 30 min in DMEM supplemented with S35 labeled Met and Cys (20 µCi/ml), after which they were washed three times with PBS and lysed with 100 µl radio-immunoprecipitation assay buffer (RIPA buffer; 100 mM sodium chloride, 1.0% Triton X-100, 0.5% sodium deoxycholate, 0.1% SDS, 50 mM Tris pH 8.0 [Sigma-Aldrich]). The lysate was centrifuged for 10 min at 20.000 rpm in a tabletop centrifuge and 15 µl of the supernatant was spotted on a glass fiber filtermat (Filtermat B, Perkin-Elmer). The filtermat was subsequently washed twice in 10% Trichloroacetic acid (TCA) and once with ethanol:acetone (50:50) for 10 min each and dried overnight. A melt-on scintillator (MeltiLex, Perkin-Elmer) was applied to the filtermat and counts per minute were monitored using a microBeta plate reader (MicroBeta2, Perkin Elmer).
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3

Radioligand Binding Assay for hGhrR

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Two micrograms of human GhrR membranes (prepared from HEK293 cells stably expressing the fusion protein hGhrR-eYFP), 60 pM [125I-His9]ghrelin (PerkinElmer, Waltham, MA, USA), and different concentrations of the test compound were incubated in HEPES buffer (20 mM HEPES, 20 mM CaCl2, 0.8 mM MgCl2, 1% Pefabloc, 1% bovine serum albumin, pH 7.4) in a 96-well plate on a shaker (200 rpm) for 2.5 h at rt. Each concentration was tested in duplicate. The membrane-bound radioligand was trapped on a Filtermat B (PerkinElmer) pre-soaked with 0.1% polyethylenimine in H2O by using a filtermat harvester (PerkinElmer). After drying for 20 min at 55 °C, a Meltilex scintillation sheet (PerkinElmer) was melted onto the filtermat and the samples were counted in a Microbeta scintillation counter (PerkinElmer). For each compound, all data points (n = 4–6) from at least two independent experiments were combined and IC50 values were obtained by a sigmoidal dose-response fit. Data were normalized to no competition (100%, minimal ghrelin effect) and full competition (0%, maximal ghrelin effect).
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4

HIV-1 Virus Quantification and Infectivity Assay

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The HEK293T and HeLa cell lines were transfected with HIV-1 proviral DNA using Lipofectamine 2000 (Invitrogen). At 48 h posttransfection, virus-containing supernatants were filtered through a 0.45-µm membrane (Merck Millipore). The amount of virus in the supernatants was quantified by RT assay. RT assays were performed as described previously (126 (link)) with minor modification. Briefly, after incubation of the virus supernatants with RT reaction mixtures, which contained a template primer of poly(rA) (5 µg/ml) and oligo(dT)12-18 primers (1.57 µg/ml), in 50 mM Tris (pH 7.8), 75 mM KCl, 2 mM dithiothreitol, 5 mM MgCl2, 0.05% Nonidet P-40, and 0.25 µCi of 32P-dTTP at 37°C for 3 h, the mixtures were spotted onto Filtermat B (Perkin Elmer; catalog number [no.] 1450-521) soaked in 0.5% (vol/vol) branched-polyethylenimine (Merck Millipore; catalog no. 402727). After washing the spotted Filtermat with 2× SSC buffer (300 mM NaCl and 30 mM sodium citrate), levels of bound 32P were measured on a Wallac MicroBeta plate reader (PerkinElmer). The 50% tissue culture infective dose (TCID50) of the virus stocks was determined using TZM-bl cells.
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