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167 protocols using phase contrast microscope

1

Scratch Wound Healing Assay with CrCP Treatment

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The HuDe cells were seeded in six-well plates. When 70% cell confluence was reached, monolayer cells were scratched in a straight line with a pipet tip; the cell debris and suspended cells were removed by washing the cells with serum-free DMEM. Images were then captured by aligning the dishes with the reference point made at 0 h using a phase contrast microscope (LEICA, Milan, Italy). The cells were incubated in complete DMEM medium (10% FBS) and treated with or without CrCP (400 nM) for 16 h at 37 °C and 5% CO2. After incubation, cells were washed twice in 1 × PBS (Ca2+ and Mg2+) (cat. number ECB4053L EUROCLONE, Milan, Italy) and fixed with 70% ethanol for 20 min at 4 °C. Two washes in 1 × PBS (Ca2+ and Mg2+) were carried out, and then cells were stained with 0.1% Crystal Violet solution for 5 min at room temperature. The dye residues were removed by washing with UltraPureTM distilled water DNAse/RNAse free (Invitrogen™, Thermo Fisher Scientific, Milan, Italy). Images were captured with a phase contrast microscope (LEICA, Milan, Italy) to evaluate cell migration. Experiments were performed in triplicate. For statistical analysis, ten overlapping shots were taken for each petri dish using a phase contrast microscope. The distance between the edges of the scars were quantified, and statistical analysis was performed by means of Mann-Whitney U test.
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2

Assessing DPT-Mediated Cell Migration and Lamellipodia Formation

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Equal density of 2 × 105 cells (HaCaT) per well was seeded in a 24 well tissue culture plate and allowed to become confluent overnight in a CO2 incubator. A scratch wound was created on the monolayer of cells using a 200 μL pipette tip. The cells were then washed twice with warm PBS and fresh medium without serum containing different concentrations of human recombinant DPT (rDPT) (4629-DP, R&D systems, USA) were added in triplicates. The migration of the cells was captured using a phase contrast microscope (Leica Microsystems, Germany) at a time interval of 2 hours and the wound area was measured using image J46 software. The percentage of wound recovered was calculated using the formula given below and its significance was computed using student's t-test. After the study period cells were fixed and observed for lamellipodia formation in a phase contrast microscope (Leica Microsystems, Germany). The protrusions formed in the treated and untreated cells were counted manually and analyzed for significance using student's t-test. For both migration and lamellipodia formation (n = 3) two-tailed test was performed.
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Melanoma Cell Migration Assay

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The A375 and HT-144 melanoma cells were treated as reported with (Bu2Sn)2TPPS and (Bu3Sn)4TPPS or with DMSO for 72 h. After treatment, as previously reported [30 (link)], 1.6 × 104 of A375 and HT-144 melanoma cells were plated in serum-free medium in the inner chamber of a 24-well culture plate (Falcon, Bredford, MA, USA) with a polyethylene terephthalate (PET) membrane (pore size, 8 μm; Falcon, Bredford, MA, USA) [31 (link)]. The lower wells were filled with RPMI supplemented with 10% FBS. After 16 h at 37 °C the cells in the upper chamber were removed with a cotton swab and the migrated cells attached to the lower surface of the transwell membrane were fixed for 20 min with 100% methanol and stained for 1h with 0.5% crystal violet in 20% methanol. After staining, all the cells on the lower side of the filters were counted under phase contrast microscope (Leica, Wetzlar, Germany).
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Cell Density and Colony Formation Assay

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After treatment with different concentrations of QFG (0.5, 1, and 1.5 mg/mL), cell density was observed by a phase-contrast microscope (Leica, Solms, Germany). Colony formation assay was conducted as described previously.17 (link)
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5

Rat Retinal Cell-hPBMC Coculture

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The upper compartments of 6-well transwell plates were pre-seeded with rat retinal cells isolated as described (Supplemental Method 2) and maintained in neural stem cell culture medium. The lower chambers were then seeded with hPBMCs in suspension at 0.5 mL/well, and the plates placed in an incubator maintained at 37 °C with an atmosphere of 5% CO2 and 100% humidity for 4 days. Each day, changes in hPBMCs morphology were examined under a phase-contrast microscope (Leica, Wetzlar, Germany). A half volume of neural stem cell culture medium in the upper compartment was exchanged for fresh medium each day.
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6

Microscopic Analysis of ADSCs

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ADSCs were observed by a phase-contrast microscope (Leica, German). And the ultrastructure was observed by transmission electron microscope (JEM-1400, Japan). Cell surface area was calculated with ImageJ (version 2.0.0, MD, USA). Cells were thresholded to remove the background to identify the whole-cell region of interest, and the area of each cell was measured and plotted.
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7

Evaluating SFN's Morphological Effects

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According to a series of concentrations and times, SK-1 and A549 cells were treated by SFN and incubated in 6-well plates. Cell morphological modification was observed with a phase-contrast microscope (Leica, Germany). Then digital camera (Olympus, Japan) was used to take photograph at different time and concentration points.
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8

Wound Healing and Invasion Assay for PC3 Cells

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A scratch wound healing model was conducted to check the migratory ability of PC3 cells following the transfection treatment. PC3 cells were plated at a density of 1 × 105 cells in 2-well Lab-Tek Chamber Slide (Sigma-Aldrich). After overnight incubation, cells were transfected with mimics or miR-NC. Wounds were created in confluent cells using a 200 μL pipette tip. The cells were rinsed several times with media to remove any free-floating cells or debris and the speed of wound closure was monitored after 24 h by measuring the change in distance of the wound edges. Each experiment was conducted in triplicate and representative scrape lines were photographed using a phase contrast microscope (Leica). For the invasion assays, after 24 h transfection, 1 × 105 cells in serum-free media were seeded onto the transwell migration chambers (8 μm pore size, Millipore). The insert in the upper chamber was coated overnight with 1 mg·mL−1 BD Matrigel Matrix (BD Biosciences, Milan, Italy). A medium containing 10% FBS was added to the lower chamber. After 24 h, the non-invading cells were removed with a cotton-tipped swab and cells at the bottom of the Matrigel were stained with May–Grunewald–Giemsa stain (Sigma-Aldrich). Stained cells were counted under a microscope (Leica) at 200X magnification in 5 random fields in each well. Experiments were independently repeated three times.
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9

NK Cell Migration Assay with OGD and ASIV

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Primary glial cells were seeded into the bottom chamber of a 24-well transwell plate with Matrigel Matrix-coated 3 μM pore size inserts (Corning) and subjected to OGD for 6 h with or without ASIV treatment. Then, purified NK cells (2×105) were seeded into the upper chamber containing RPMI 1640 with 10% FBS at 37°C for 4 and 12 h. The fluid at 5 randomly selected fields in the lower chamber was collected in each well and the number of NK cells that migrated through the insert was counted under a phase contrast microscope (Leica, Germany).
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10

Histological Analysis of NOA Testicular Tissues

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The testicular tissues from the NOA-affected probands were fixed in 4% paraformaldehyde solution overnight, embedded in paraffin and sectioned at 5 μm thickness. Paraffin sections were dewaxed with xylene for 30 min, and then, rehydrated sequentially in 95, 90, 85 and 70% ethanol each for 10 min, followed in PBS solution for 10 min, and stained with hematoxylin and eosin according to standard protocols (catalogue number: ab245880, Abcam, Cambridge, UK). All the staining sections were captured by phase-contrast microscope to observe the structure changes of testicular tissues (Leica).
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