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5 protocols using anti gcn5

1

Western Blot Analysis of Signaling Proteins

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20μg of protein was electrophoresed on 4-12% Nu-Page gel (Life Technologies) and transferred to a nitrocellulose membrane. Membranes were blocked in 5% milk in TBST at room temperature for 30 minutes. Membranes were incubated overnight at 4 degrees Celsius with the primary antibodies: anti-GCN5 (1:1000), anti-MYC (1:1000), anti-AKT (1:1000), anti-phospho-AKT (1:1000), anti-SYK (1:1000), anti-BTK (1:1000), anti-FOXO1 (1:1000), anti-phospho-FOXO1 (1:1000), and anti-PARP (1:1000) (Cell Signaling); anti-Ada2b (1:500); anti-Beta Actin (1:5000) (Santa Cruz), anti-USP22 (1:1000) (homemade); H3 acetyl lysine 9 (1:500) (Millipore); H3(1:10,000) (Abcam). Membranes were incubated in secondary-horseradish peroxidase (HRP) conjugated antibodies (GE Healthcare, Cat. # NA934V for Rabbit, NA931V for Mouse) for 1 hour at room temperature. Amersham ECL Prime Western Blotting Detection Reagent (GE Healthcare) was used for chemiluminescent protein detection.
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2

Protein Extraction and Immunoblotting

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Cell pellets were dried, and then cells were lysed in RIPA buffer containing protease and phosphatase inhibitors. The following antibodies were used for detection of the desired proteins: PCAF (1:1000, sc13124, Santa Cruz), anti-GCN5 (1:1000, #3305, Cell Signalling), anti-PML (1:1000, sc966, Santa Cruz), α-tubulin (1:1000, T6199, Sigma-Aldrich), and β-actin (1:1000, A1978, Sigma-Aldrich).
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3

Protein Extraction and Western Blot Analysis

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Cells were washed in phosphate‐buffered saline (PBS, Thermo Fisher Scientific) and lysed using protein extraction buffer (10 mM Tris‐HCl pH 7.4, 150 mM NaCl, 1% sodium deoxycholate (NaDoc), 0.1% sodium dodecyl sulphate (SDS) and 1% glycerol) supplemented with protease and phosphatase inhibitor mix (Roche). Total lysates were quantified using BCA Protein Assay Kit (Life Technologies). 15 µg of proteins was separated by SDS‐PAGE on precast gradient (4–12%) gels (Invitrogen) and transferred onto nitrocellulose membrane in Transfer buffer (Invitrogen) supplemented with 10% (vol/vol) methanol. Membranes were blocked in PBS 0.05% Tween 5% non‐fat dry milk for 1 h at room temperature (RT) and then incubated overnight at 4°C with anti‐GCN5 (1:1000, Cell Signaling, #3305, rabbit) and anti‐GAPDH (1:5000, Santa Cruz, Sc‐32233, mouse). After washing, membranes were incubated with the appropriate HRP‐conjugated secondary antibody for 1 h at RT. Detection was performed using the enhanced chemiluminescence system (ECL, Pierce™ ECL Western Blotting Substrate kit). Images were acquired with the ChemiDoc MP Imaging System (Bio‐rad) and quantified using Image Lab software 5.2.1 (Bio‐Rad).
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4

Immunohistochemical Analysis of Human Ventricular Tissue

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Human ventricular samples were processed as previously described.23, 24 Briefly, they were fixed in 4% PFA (Santa‐Cruz) in PBS (Lonza) and processed for paraffin embedding. 6 μm thick sections were de‐waxed and rehydrated. Antigen retrieval was performed with Dako target retrieval solution citrate pH6 at 90°C. Human sections were incubated with anti‐GCN5 (1:100; Cell Signaling, #3305, rabbit), anti‐4HNE (1:200; Abcam, ab46545, rabbit) and anti‐cardiac Troponin T (1:300; ThermoFisher Scientific, #MA5‐12960, mouse) at 4°C overnight. After washing, sections were incubated with the appropriate fluorochrome‐conjugated secondary antibody Alexa 488 (A11034, 1:200) or Alexa 633 (A221126, 1:200) (AlexaFluor) for 1h at room temperature in the dark. Nuclear staining was performed by incubating sections with Hoechst 33342 (1:1000, ThermoFisher Scientific). Images were acquired with a confocal microscope (Zeiss LSM710—ConfoCor3 LSM, Zeiss) using the software Zen 2008 (Zeiss) and quantified with the software AxioVision Rel. 4.8.
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5

Isolation and Culture of Primary Mouse Cells

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Primary mouse embryonic fibroblasts (MEFs) were isolated from 13.5 days old embryos derived from crossing heterozygous mice following standard procedures and maintained in DMEM supplemented with 15% FBS, penicillin-streptomycin and 100 μm β-mercaptoethanol. Mouse primary keratinocytes were isolated from 2 day old mice following previously described protocol (26 (link)) and cultured in defined keratinocyte-SFM (Life Technologies Cat. No. 10744019). The following antibodies were used in the study: anti-E2F1 (C20, Santa Cruz, Cat. No. sc-193), anti-CPD (Cosmo Bio, clone TDM-2, Cat. No. CAC-MN-DND-001), anti-6-4PP (Cosmo Bio, clone 64M-2, Cat. No. CAC-MN-DND-002), anti-XPC (Bioss USA antibodies Cat. No. bs-6634R), anti-XPA (sc-853), anti-GCN5 (Cell signaling Cat. No. 3305S), anti-H3K9ac (Cell Signaling Cat. No. 9649S), anti-p53 (Novus Biologicals Cat. No. NB200-103), GAPDH (GenScript Cat. No. A00191) and normal rabbit IgG (Cell Signaling Cat. No. 2729).
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