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13 protocols using pmxs hc myc

1

Immortalized Mouse Embryonic Fibroblasts

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Mouse embryonic fibroblasts (MEFs) were isolated from a 13.5-day-old Ezh2flox/flox; 4-hydroxytamoxifen-inducible Rosa26::CreERT2 embryo and immortalized by transduction of pMXs-hc-MYC (Addgene 17220) followed by limiting dilution and clone derivation (see “iMEF B” in ref. 32 (link)). Cells were grown in Dulbecco’s Modified Eagle Medium (DMEM) high-glucose (4.5 g/L) supplemented with 10% fetal calf serum (FCS), nonessential amino acids and 2 mM L-glutamine at 37 °C with 5% CO2 and 98% humidity. OCI-Ly19 cells transduced with an empty vector (control) or with a vector expressing EZH2Y646F were a kind gift from N. Katanayeva and E. Oricchio. They were grown in RPMI medium supplemented with 10 % FCS at 37 °C with 5% CO2 and 98% humidity.
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2

Isolation and Purification of TF3 Monomer

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TF3 monomer (purity: 92.4%) was isolated and purified using previously established method (15 (link)). Wortmannin and N-[N-(3,5-difluorophenacetyl)-L-alanyl]-S-phenylglycine t-butyl ester (DAPT) were purchased from Sigma and Santa Cruz Biotechnology (Santa Cruz, CA, USA), respectively. Antibodies against phospho-Akt (Ser473) (p-Akt), Akt, phospho-p70S6 kinase (Thr421/Ser424) (p-p70S6K), p70S6K, eukaryotic initiation factor 4E-binding protein-1 (4E-BP1), HIF-1α, Notch-1, c-Jun N-terminal kinases (JNK), p38 and phosphor-Forkhead Box O1 (Thr24) (p-FoxO1) were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). Antibodies against phosphor-mammalian target of rapamycin (p-mTOR) (Ser2448), mTOR were purchased from R&D Systems (Minneapolis, MN, USA). Antibodies against phosphor-4E-BP1 (Ser65/Thr70) (p-4E-BP1), c-Myc, phosphor-extracellular signal-regulated kinases 1/2 (Thr202/Tyr204) (p-ERK1/2), ERK1/2 and GAPDH were purchased from Santa Cruz Biotechnology Inc. (Santa Cruz). Plasmids (myrAkt delta4-129, pcDNA3-Flag mTOR wt, pWZL Neo Myr Flag RPS6KB1, pET14b PHAS-I, HA-HIF1alpha-pcDNA3, 3XFlagNICD1, pMXs-hc-Myc, ODD-Luciferase-pcDNA3, VEGF promoter, cMyc promoter (TBE1/2-wt), and pCBFRE-luc) were purchased from Addgene (Cambridge, MA, USA).
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3

Transient Transfection of Plasmids in Cells

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Plasmids, including pWZL Neo Myr Flag PKM2 and pMXs-hcMYC were obtained from Addgene (Cambridge, MA). pcDNA Flag GFP (Flag-GFP) was preserved in our laboratory and was used as control. Cell transfection was performed using Lipofectamine 2000 (Invitrogen, CA) according to the manufacturer’s instructions. Briefly, PC-3 or MCF-7 cells were plated onto a 96-well plate. When the cells are cultured to approximately 85% confluence, the media were replaced with OPTI-MEM. Then, 3 µg plasmids and 30 µl lipofectamine reagent was mixed in a tube containing 1500 µl OPTI-MEM by vigorous vortexing. After incubation for 15 min, the mixture was added to the cell cultures and incubated for certain times.
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4

Generation of Induced Pluripotent Stem Cells

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Retrovirus was made by transfecting 293FT cells with pUMVC and pCMV-VSV-g plasmids, and individual plasmids: pMXs-hKLF4, pMXs-hSOX2, pMXs-hOCT4 or pMXs-hcMYC (Addgene, Cambridge, MA, USA) at a 1:1:1 ratio using Lipofectamine 2000 (Invitrogen, 11668-019). Virus supernatant was collected and combined, filtered through a 0.45-μm filter (EMD Millipore, SCHVU01RE, Billerica, MA, USA) and concentrated 80–100-fold in a centrifugal filter with a 1 00 000 MWCO (EMD Millipore, UFC910008). The concentrate containing all four factors was then used immediately to transduce fibroblasts at a final concentration between 3- and 12-fold.
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5

Conditional Deletion and Rescue of Ezh2 in iMEF Cells

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iMEF cells were grown in DMEM supplemented with 10% FCS, 100 mM nonessential amino acids, 1 mM L-glutamine. Ezh2flox/flox;ROSA26-CreERT2 or Ezh2flox;ROSA26-CreERT2 MEF cells were isolated from 13.5-d-old embryos and subsequently infected with the following retroviral constructs: pMXs-hc-MYC (Addgene, 17220) to generate c-Myc iMEFs, pBABE-hygro p53 DD (Addgene, 9058) to generate p53-DN iMEFs, and Ndy1-MigR1 (kindly provided by Philip N. Tsichlis) to generate Ndy1 iMEFs. A clone was obtained by limiting dilution of a pool of c-Myc Ezh2flox;ROSA26-CreERT2 iMEFs. For conditional deletion of Ezh2, cells were treated with 4-hydroxytamoxifen (Sigma) at a final concentration ranging from 1 nM to 1 µM. For Ezh1 and Ezh2 rescue experiments, cells were infected with MSCVhygro-Flag-Ezh1 or MSCVhygro-Flag-Ezh2 ecotropic retroviruses.
The Myc-CaP mouse prostate cancer cell line was generously provided by Charles L. Sawyers, and cells were grown in DMEM supplemented with 10% FCS, 100 mM nonessential amino acids, and 1 mM L-glutamine. To obtain optimal growth conditions, the growth medium was supplemented with a growth factor cocktail composed of 25 µg/mL bovine pituitary extract (Life Technologies), 5 µg/mL bovine insulin (Sigma), and 6 ng/mL recombinant human epidermal growth factor (Sigma).
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6

Retroviral Reprogramming of Fibroblasts

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Reprogramming of BJ fibroblasts was done as previously described [28 (link)]. In brief, retroviral supernatants were produced by transfecting HEK-293T cells (5 × 106 cells per 100-mm-diameter dish) with the ecotropic packaging plasmid pCL-Ampho (4 μg) together with one of the following retroviral constructs (4 μg): pMXs-hKlf4, pMXs-hSox2, pMXs-hOct4 and pMXs-hc-Myc (Addgene #13370, 13367, 17217, 17220, respectively). BJ fibroblasts (WT, TERT-/- and TERC-/-) had been seeded the previous day (1 × 105 cells per well of 6-well plate) and received 0.5 ml of each of the corresponding retroviral supernatants. This procedure was repeated every 12 h for 2 days (a total of four rounds of infections). The day after infection was completed, media was replaced by human fibroblast media, and kept for a further 2 days. At day 8, cells were trypsinized and reseeded on feeder plate (CF-1 MEF, 1 × 106 cells per 100-mm-diameter dish). At day 9, medium was changed to hES cell medium. At day 20, colonies with ES-like morphology became visible under the microscope. Colonies were picked after 3 weeks and expanded on feeder fibroblasts using standard procedures or adapted to matrigel-coated plates with mTeSR1.
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7

Retroviral Reprogramming of Fibroblasts

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Retrovirus was generated using constructs pMXs‐hOCT4, pMXs‐hSOX2, pMXs‐hKLF4, pMXs‐hc‐MYC (Addgene) as described previously (Hotta et al., 2009; Chang et al., 2013). To generate VSV‐G pseudotyped retrovirus, Plat‐GP cells were transfected with 15 mg of expression vector and 5 mg of pVSV‐G. Two days post‐transfection, retrovirus was collected and filtered through a 0.45‐mm filter. Transduction of 5 × 105 patient fibroblasts was performed by the addition of polybrene to a final concentration of 4 mg mL−1 to a retroviral cocktail either containing a combination of four factors or five factors. After transduction, fibroblasts were maintained in fibroblast medium for 6 days, then trypsinized and replated onto fresh mouse embryonic fibroblasts (MEFs). Fibroblast media was then replaced with hESC media and was changed daily. Approximately 20 days later, colonies resembling hESCs in morphology were mechanically picked and replated onto fresh MEFs. These iPSCs were mechanically dissociated for a few passages and then adapted to collagenase IV passaging.
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8

Generation of Immortalized MEF Cells

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iMEF cells were grown in DMEM medium supplemented with 10% FCS, 100 mM non essential amino acids, 1 mM L-Glutamine. Ezh2 flox/flox;ROSA26-CreERT2 MEF cells were isolated from 13.5 d old embryos and subsequently infected with the following retroviral constructs: pMXs-hc-MYC (addgene 17220) to generate c-Myc iMEFs, pBABE-hygro p53 DD (addgene 9058) to generate p53-DN iMEFs, Ndy1-MigR1 (kindly provided by Philip N. Tsichlis) to generate Ndy1 iMEFs.
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9

Reprogramming Fibroblasts into iPSCs

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iPS-NHDF-1 and iPS-NHDF-2 were derived from NHDFs (Lonza; CC-2511). Reprogramming plasmids were obtained from Addgene (17220: pMXs-hc-MYC, 17219: pMXs-hKLF4, 17218: pMXs-hSOX2, 17217: pMXs-hOCT3/4, 13354: pMXs-Nanog) [14] and packaged using the Plat-GP retroviral packaging cell line. Fibroblasts were infected on days 0 and 1with 5 µg/ml polybrene and spinoculation (1200×g for 45 minutes at 16°C). They were transferred onto mitomycin C-inactivated mouse embryonic feeder cells (MEFs; outbred Swiss mice [15] (link), [16] (link) established and maintained at the Department of Pathology, Oxford) on 0.1% gelatin coated plates on day 4. From day 5 onwards, cells were cultured in KnockOut™ serum replacement medium (Life Technologies) supplemented with 50 µg/ml ascorbic acid and 0.5 µM valproic acid. Medium was replaced (50%) on alternate days, and substituted with MEF-conditioned medium from day 10 onwards.
Colonies displaying iPSC morphology were picked on day 28 and transferred onto MEFs by manual dissection every 5–7 days. Prior to differentiation, iPSC lines were adapted to feeder-free conditions onto Matrigel-coated plates (BD Matrigel hESC-qualified Matrix) in mTeSR™1 (StemCell Technologies) supplemented with Rock inhibitor Y27632 (10 µM; Calbiochem) on the day of passage.
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10

Retroviral Reprogramming of Fibroblasts

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Reprogramming of BJ fibroblasts was done as previously described [28 (link)]. In brief, retroviral supernatants were produced by transfecting HEK-293T cells (5 × 106 cells per 100-mm-diameter dish) with the ecotropic packaging plasmid pCL-Ampho (4 μg) together with one of the following retroviral constructs (4 μg): pMXs-hKlf4, pMXs-hSox2, pMXs-hOct4 and pMXs-hc-Myc (Addgene #13370, 13367, 17217, 17220, respectively). BJ fibroblasts (WT, TERT-/- and TERC-/-) had been seeded the previous day (1 × 105 cells per well of 6-well plate) and received 0.5 ml of each of the corresponding retroviral supernatants. This procedure was repeated every 12 h for 2 days (a total of four rounds of infections). The day after infection was completed, media was replaced by human fibroblast media, and kept for a further 2 days. At day 8, cells were trypsinized and reseeded on feeder plate (CF-1 MEF, 1 × 106 cells per 100-mm-diameter dish). At day 9, medium was changed to hES cell medium. At day 20, colonies with ES-like morphology became visible under the microscope. Colonies were picked after 3 weeks and expanded on feeder fibroblasts using standard procedures or adapted to matrigel-coated plates with mTeSR1.
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